Detailed information NTG0711796

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NPA28_RS19130
• Genome accession: NZ_CP101718
• Coordinates: 3766103..3767248 (+)
• Length: 381 a.a.
• NCBI ID: WP_044159817.1
• Uniprot ID: -
• Organism: Bacillus halotolerans strain S-5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3761103..3772248

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NPA28_RS19110 (NPA28_19110)	-	3762002..3763279 (+)	1278	WP_256766471.1	pitrilysin family protein	-
NPA28_RS19115 (NPA28_19115)	-	3763276..3763977 (+)	702	WP_256766472.1	bacteriocin biosynthesis protein AlbG	-
NPA28_RS19120 (NPA28_19120)	-	3763984..3764338 (-)	355	Protein_3722	YncE family protein	-
NPA28_RS19125 (NPA28_19125)	-	3764516..3765874 (-)	1359	WP_044159815.1	YncE family protein	-
NPA28_RS19130 (NPA28_19130)	rapF	3766103..3767248 (+)	1146	WP_044159817.1	tetratricopeptide repeat protein	Regulator
NPA28_RS19135 (NPA28_19135)	-	3767232..3767351 (+)	120	WP_024123223.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
NPA28_RS19140 (NPA28_19140)	speB	3767458..3768330 (-)	873	WP_044159819.1	agmatinase	-
NPA28_RS19145 (NPA28_19145)	speE	3768391..3769221 (-)	831	WP_059335162.1	spermidine synthase	-
NPA28_RS19150 (NPA28_19150)	-	3769422..3771497 (+)	2076	WP_256766473.1	transglycosylase domain-containing protein	-
NPA28_RS19155 (NPA28_19155)	-	3771530..3771952 (-)	423	WP_215510050.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45458.93 Da
• Isoelectric Point: 4.8458

>NTDB_id=711796 NPA28_RS19130 WP_044159817.1 3766103..3767248(+) (rapF) [Bacillus halotolerans strain S-5]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLENMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYILAIQFFKKAESKLTFVTDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYNEQTTYDIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAAQQPQLMGRTLYNIALCKQNQHSLES
AIEYVKKSIHVFEESKMVPSLPQAFFLITQIYFKLGKIDNACEYHKKGRDYSIAAGDTVYLTEFEFLESLYLSGPDEAAI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=711796 NPA28_RS19130 WP_044159817.1 3766103..3767248(+) (rapF) [Bacillus halotolerans strain S-5]
GTGACAAGTGTCATATCTTCTTCTTCCGTTGGAGAAAAGATTAATGAATGGTATATGTACATACGCCGATTCAGCATACC
GGATGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAACATGCGGATAGAGGAACAGCCGCGA
CTGTCCGATTTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTACTTTAATTTCTTCAG
AGGTATGTACGAACTGGATCGCCGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTG
TGACAGATAAAATTGATAAAGCTGAGTTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCC
ATGGACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGATATCAGAATGATTCAATGCCAATCCCT
GTTTGGAGCTAACTTTTTGGATCTGAAACAGTATGATAAAGCAATTGCCCATTTCCAAAAAGCTTATACACTTGCTGAGG
CGGCACAGCAGCCGCAGCTAATGGGAAGAACGCTTTATAATATTGCACTTTGCAAGCAAAACCAACACAGTCTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAGAATCGAAAATGGTTCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGCAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGATTATTCAATAG
CTGCCGGAGACACTGTGTACTTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGCAGCAATA
GAAAAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTA
TCATCAGCAGGAAAATTACAAAAAAGCATCTACTTATTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (193-213)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.265	100	0.793
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567