Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NPA28_RS14140 Genome accession   NZ_CP101718
Coordinates   2772329..2773075 (-) Length   248 a.a.
NCBI ID   WP_202657486.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2767329..2778075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS14115 (NPA28_14115) mreC 2767737..2768609 (-) 873 WP_256766276.1 rod shape-determining protein MreC -
  NPA28_RS14120 (NPA28_14120) mreB 2768640..2769653 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  NPA28_RS14125 (NPA28_14125) radC 2769745..2770440 (-) 696 WP_044154171.1 DNA repair protein RadC -
  NPA28_RS14130 (NPA28_14130) - 2770478..2771047 (-) 570 WP_256766277.1 Maf family nucleotide pyrophosphatase -
  NPA28_RS14135 (NPA28_14135) - 2771198..2772196 (-) 999 WP_059293487.1 SPOR domain-containing protein -
  NPA28_RS14140 (NPA28_14140) comC 2772329..2773075 (-) 747 WP_202657486.1 A24 family peptidase Machinery gene
  NPA28_RS14145 (NPA28_14145) - 2773217..2774509 (-) 1293 WP_256766278.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NPA28_RS14150 (NPA28_14150) valS 2774569..2777211 (-) 2643 WP_069487106.1 valine--tRNA ligase -
  NPA28_RS14155 (NPA28_14155) - 2777660..2777851 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26567.18 Da        Isoelectric Point: 9.7865

>NTDB_id=711777 NPA28_RS14140 WP_202657486.1 2772329..2773075(-) (comC) [Bacillus halotolerans strain S-5]
MIPILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDIKLFAVIGLVLGVKMLAAAFFFSVLIGALYGAAAVLFGRLARKQPLPFAPAIAAGSIFAYLYGDSIIS
FYVKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=711777 NPA28_RS14140 WP_202657486.1 2772329..2773075(-) (comC) [Bacillus halotolerans strain S-5]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATACCCTTGCACAT
ATCCATCATAAGTCCGCGTTCGGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTCGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATATTAAATTATTTGCCGTTATCGGCCTTGTACTTGGTGTAAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCTGTTCTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGCTTCCCTTTGCACCGGCAATTGCGGCAGGAAGTATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAATGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

81.452

100

0.815