Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NPA28_RS08010 Genome accession   NZ_CP101718
Coordinates   1563526..1564101 (+) Length   191 a.a.
NCBI ID   WP_044156058.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1558526..1569101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS07980 (NPA28_07980) dapD 1558699..1559409 (+) 711 WP_024121226.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NPA28_RS07985 (NPA28_07985) - 1559480..1560604 (+) 1125 WP_069486479.1 N-acetyldiaminopimelate deacetylase -
  NPA28_RS07990 (NPA28_07990) - 1560665..1560910 (+) 246 WP_010334064.1 YkuS family protein -
  NPA28_RS07995 (NPA28_07995) - 1560945..1561748 (-) 804 WP_044156062.1 mechanosensitive ion channel family protein -
  NPA28_RS08000 (NPA28_08000) ahpA 1561992..1562534 (+) 543 WP_010334066.1 biofilm-specific peroxidase AhpA -
  NPA28_RS08005 (NPA28_08005) ykuV 1562616..1563074 (+) 459 WP_059292859.1 thiol-disulfide oxidoreductase YkuV -
  NPA28_RS08010 (NPA28_08010) rok 1563526..1564101 (+) 576 WP_044156058.1 transcriptional regulator Rok Regulator
  NPA28_RS08015 (NPA28_08015) - 1564143..1565108 (-) 966 WP_256766867.1 sporulation protein -
  NPA28_RS08020 (NPA28_08020) - 1565241..1565840 (+) 600 WP_256766869.1 molybdenum cofactor guanylyltransferase -
  NPA28_RS08025 (NPA28_08025) - 1565892..1566911 (+) 1020 WP_044156054.1 MoeB/ThiF family adenylyltransferase -
  NPA28_RS08030 (NPA28_08030) glp 1566929..1568221 (+) 1293 WP_256766870.1 gephyrin-like molybdotransferase Glp -
  NPA28_RS08035 (NPA28_08035) mobB 1568182..1568703 (+) 522 WP_044156052.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21799.79 Da        Isoelectric Point: 9.8783

>NTDB_id=711750 NPA28_RS08010 WP_044156058.1 1563526..1564101(+) (rok) [Bacillus halotolerans strain S-5]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEVKKDFRSERKTDSLPVLAELAAQEIRSYQPPS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGDIESAESATE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=711750 NPA28_RS08010 WP_044156058.1 1563526..1564101(+) (rok) [Bacillus halotolerans strain S-5]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGATTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGCGATAAAATATACGCTAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAGTCAAAAAGGATTTCC
GTTCTGAACGAAAAACTGACTCTCTGCCGGTTCTCGCCGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCCATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCTAAAGCAGCTAAACTGCGTGAAGCGGCTATTAAAACATTAAAACGCCACAACGCGG
CAATTAAAAGCTCTGAACTTCAAAAAGAGATTGAAAAGGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGTTTAATTAAAATGTATCCGGAAGTGAAAAAACCGTATCGCGGCCAGTACATTTTAGAGGGTGACATCGAATCAGCTGA
ATCAGCAACAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

96.859

100

0.969