Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NPA28_RS07905 Genome accession   NZ_CP101718
Coordinates   1546926..1547390 (-) Length   154 a.a.
NCBI ID   WP_024121211.1    Uniprot ID   A0A9Q6A820
Organism   Bacillus halotolerans strain S-5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541926..1552390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS07885 (NPA28_07885) kinA 1542389..1544209 (+) 1821 WP_024121207.1 sporulation histidine kinase KinA -
  NPA28_RS07890 (NPA28_07890) - 1544219..1545402 (-) 1184 Protein_1500 aminotransferase A -
  NPA28_RS07895 (NPA28_07895) - 1545604..1545765 (-) 162 WP_003238943.1 hypothetical protein -
  NPA28_RS07900 (NPA28_07900) cheV 1545973..1546884 (+) 912 WP_024121210.1 chemotaxis protein CheV -
  NPA28_RS07905 (NPA28_07905) kre 1546926..1547390 (-) 465 WP_024121211.1 YkyB family protein Regulator
  NPA28_RS07910 (NPA28_07910) - 1547515..1548807 (-) 1293 WP_059335883.1 MFS transporter -
  NPA28_RS07915 (NPA28_07915) - 1548883..1549377 (-) 495 WP_081638296.1 L,D-transpeptidase family protein -
  NPA28_RS07920 (NPA28_07920) - 1549435..1550295 (-) 861 WP_044156078.1 metallophosphoesterase -
  NPA28_RS07925 (NPA28_07925) fadH 1550440..1551204 (+) 765 WP_256766864.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17884.73 Da        Isoelectric Point: 10.4658

>NTDB_id=711749 NPA28_RS07905 WP_024121211.1 1546926..1547390(-) (kre) [Bacillus halotolerans strain S-5]
MDDHAYSKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQKYVGMKEKPLVTNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=711749 NPA28_RS07905 WP_024121211.1 1546926..1547390(-) (kre) [Bacillus halotolerans strain S-5]
ATGGACGACCATGCATACTCGAAAGATCTGCAGCCAACCGTAGAGAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAAAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAGTCGTACCGAAA
TCCAAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTATTGCAAAAATACGTCGGCATGAAAGAAAAGCCGCTTGTGA
CGAATCGCCAGCAGCCCGCTTATCATAAGCCTGTCTTTAAGAAACTCGGCGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

98.052

100

0.981