Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NPA28_RS00580 Genome accession   NZ_CP101718
Coordinates   105725..107101 (+) Length   458 a.a.
NCBI ID   WP_256766571.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100725..112101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS00560 (NPA28_00560) ctsR 101078..101542 (+) 465 WP_010332747.1 transcriptional regulator CtsR -
  NPA28_RS00565 (NPA28_00565) mcsA 101556..102113 (+) 558 WP_044153451.1 protein-arginine kinase activator protein McsA -
  NPA28_RS00570 (NPA28_00570) - 102113..103204 (+) 1092 WP_059291687.1 protein arginine kinase -
  NPA28_RS00575 (NPA28_00575) clpC 103201..105633 (+) 2433 WP_010332750.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  NPA28_RS00580 (NPA28_00580) radA 105725..107101 (+) 1377 WP_256766571.1 DNA repair protein RadA Machinery gene
  NPA28_RS00585 (NPA28_00585) disA 107105..108187 (+) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  NPA28_RS00590 (NPA28_00590) - 108307..109407 (+) 1101 WP_059291688.1 PIN/TRAM domain-containing protein -
  NPA28_RS00595 (NPA28_00595) ispD 109422..110120 (+) 699 WP_059291689.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NPA28_RS00600 (NPA28_00600) ispF 110113..110589 (+) 477 WP_044153442.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49560.12 Da        Isoelectric Point: 8.2443

>NTDB_id=711723 NPA28_RS00580 WP_256766571.1 105725..107101(+) (radA) [Bacillus halotolerans strain S-5]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSTRHVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIEEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVVNVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=711723 NPA28_RS00580 WP_256766571.1 105725..107101(+) (radA) [Bacillus halotolerans strain S-5]
ATGGCTAAAACAAAATCCAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACCGTACAGAAACCTTCCCCGATAACATCAATCGAAACATCAGAAGAACCCCGGGTTAAAACACAGCTTGGCGAGTTT
AACAGAGTGCTCGGCGGCGGTGTGGTGAAGGGCTCACTTGTTTTAATTGGCGGGGACCCCGGCATCGGAAAATCGACCTT
ATTACTGCAAGTATCCGCTCAGTTATCTGGTTCAACACGTCATGTTCTGTACATTTCAGGAGAAGAATCGGTAAAACAAA
CGAAATTAAGAGCAGACCGTCTGGGCATAAATAATCCCTCACTGCATGTTTTATCCGAAACCGATATGGAGTATATTTCG
TCTGCTATAGAAGAGATGAATCCAGCGTTTGTGGTTGTTGACTCTATTCAAACGGTCTATCAAAGCGATATCACCTCGGC
TCCCGGCAGTGTGTCACAGGTAAGAGAATGTACAGCCGAGCTGATGAAAATTGCAAAGACAAAAGGTATTCCGATATTTA
TTGTAGGTCACGTAACGAAAGAAGGATCCATAGCGGGGCCGAGACTGCTGGAGCATATGGTTGACACTGTTTTATACTTT
GAAGGAGAACGTCACCATACTTTCCGAATCTTACGGGCTGTAAAAAACCGCTTTGGTTCTACAAACGAAATGGGTATTTT
TGAAATGCGGGAAGAAGGGCTCACTGAGGTACTGAATCCTTCAGAGATCTTCTTAGAAGAGCGTTCGGCGGGATCTGCGG
GGTCGAGCATAACGGCTTCTATGGAAGGTACAAGACCGATTCTTGTTGAAATTCAGGCGCTCATCTCGCCAACAAGCTTT
GGCAATCCGCGGCGCATGGCAACAGGGATAGATCATAACAGGGTGTCACTGTTAATGGCTGTGTTAGAAAAAAGAGTAGG
TCTGCTGCTGCAAAACCAGGATGCATATTTGAAGGTAGCGGGCGGCGTCAAACTTGATGAACCTGCGATTGATCTTGCTA
TAGCGGTCAGTATCGCATCAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGCTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGTCGGGTATCAAGGATTGAACAGCGTGTAAAAGAAGCGGCAAAGCTTGGTTTTAAACGCATGATCATACC
TGCGGCAAATCTGGATGGATGGACGAAACCAAAAGGGATTGAGGTCATCGGAGTAGTAAATGTTGCAGAGGCACTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

AAA domain (AAA_25)

(72-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

98.253

100

0.983
  radA Streptococcus mitis NCTC 12261

63.797

98.908

0.631
  radA Streptococcus pneumoniae Rx1

63.797

98.908

0.631
  radA Streptococcus pneumoniae D39

63.797

98.908

0.631
  radA Streptococcus pneumoniae R6

63.797

98.908

0.631
  radA Streptococcus pneumoniae TIGR4

63.797

98.908

0.631
  radA Streptococcus mitis SK321

63.576

98.908

0.629