Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   NFC81_RS07930 Genome accession   NZ_CP101717
Coordinates   1791760..1792098 (-) Length   112 a.a.
NCBI ID   WP_304993949.1    Uniprot ID   A0AB38YBB1
Organism   Salinispirillum sp. LH 10-3-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1786760..1797098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFC81_RS07905 (NFC81_07905) - 1787267..1787743 (-) 477 WP_304993944.1 hypothetical protein -
  NFC81_RS07910 (NFC81_07910) - 1787814..1788575 (-) 762 WP_304993945.1 pseudouridine synthase -
  NFC81_RS07915 (NFC81_07915) - 1788548..1789672 (-) 1125 WP_304993946.1 alanine racemase -
  NFC81_RS07920 (NFC81_07920) - 1789669..1790946 (-) 1278 WP_304993947.1 D-arabinono-1,4-lactone oxidase -
  NFC81_RS07925 (NFC81_07925) - 1790957..1791658 (-) 702 WP_304993948.1 alanyl-tRNA editing protein -
  NFC81_RS07930 (NFC81_07930) pilZ 1791760..1792098 (-) 339 WP_304993949.1 PilZ domain-containing protein Machinery gene
  NFC81_RS07935 (NFC81_07935) holB 1792116..1793105 (-) 990 WP_304993950.1 DNA polymerase III subunit delta' -
  NFC81_RS07940 (NFC81_07940) tmk 1793105..1793725 (-) 621 WP_304993951.1 dTMP kinase -
  NFC81_RS07945 (NFC81_07945) mltG 1793722..1794771 (-) 1050 WP_304993952.1 endolytic transglycosylase MltG -
  NFC81_RS07950 (NFC81_07950) - 1794758..1795576 (-) 819 WP_304993953.1 aminotransferase class IV -
  NFC81_RS07955 (NFC81_07955) fabF 1795615..1796856 (-) 1242 WP_304993954.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12143.19 Da        Isoelectric Point: 9.4459

>NTDB_id=711712 NFC81_RS07930 WP_304993949.1 1791760..1792098(-) (pilZ) [Salinispirillum sp. LH 10-3-1]
MVPGSGILQVTMKDKAVLYAAYMPWVKGGGLFIATNKQFKLGDDVFLLLNLMDEPEKIPVTGKVVWITPKGAQGNRATGI
GVQFDGKSELAKDKIETYLAGAMNSDRPTHTM

Nucleotide


Download         Length: 339 bp        

>NTDB_id=711712 NFC81_RS07930 WP_304993949.1 1791760..1792098(-) (pilZ) [Salinispirillum sp. LH 10-3-1]
ATGGTTCCTGGTAGTGGTATTCTGCAAGTCACGATGAAAGACAAGGCGGTGCTCTATGCTGCTTATATGCCTTGGGTGAA
AGGGGGCGGTCTGTTCATTGCCACCAATAAGCAGTTTAAATTGGGTGACGATGTATTTTTGCTGCTCAACCTTATGGATG
AACCCGAAAAAATCCCGGTGACGGGTAAGGTTGTCTGGATCACCCCGAAAGGGGCCCAAGGTAATCGTGCAACCGGCATC
GGTGTGCAGTTTGACGGCAAAAGTGAACTGGCCAAAGACAAGATAGAAACCTATTTGGCGGGCGCCATGAATTCCGACCG
GCCCACACACACCATGTAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(9-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

50.467

95.536

0.482
  pilZ Legionella pneumophila strain ERS1305867

50.467

95.536

0.482