Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   K6J69_RS00270 Genome accession   NZ_AP018777
Coordinates   57843..58355 (-) Length   170 a.a.
NCBI ID   WP_041175282.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52843..63355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS00255 (CHBNIII6_00510) comQ 56164..56451 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  K6J69_RS00260 (CHBNIII6_00520) comP 56444..57127 (-) 684 WP_065245144.1 DUF2572 family protein Machinery gene
  K6J69_RS00265 (CHBNIII6_00530) comO 57127..57843 (-) 717 WP_065245143.1 type II secretion system protein J Machinery gene
  K6J69_RS00270 (CHBNIII6_00540) comN 57843..58355 (-) 513 WP_041175282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  K6J69_RS00275 (CHBNIII6_00550) suhB 58555..59358 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  K6J69_RS00280 (CHBNIII6_00560) nrfE 59468..61375 (+) 1908 WP_110431332.1 heme lyase NrfEFG subunit NrfE -
  K6J69_RS00285 (CHBNIII6_00570) - 61375..61905 (+) 531 WP_050838191.1 DsbE family thiol:disulfide interchange protein -
  K6J69_RS00290 (CHBNIII6_00580) nrfF 61902..63047 (+) 1146 WP_050838190.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19930.25 Da        Isoelectric Point: 8.7160

>NTDB_id=71163 K6J69_RS00270 WP_041175282.1 57843..58355(-) (comN) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MQKGMTLVELLIGLAIISIVLSFVVPLWQTDLPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHYIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=71163 K6J69_RS00270 WP_041175282.1 57843..58355(-) (comN) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGCAGAAAGGTATGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGTGCTGAGTTTTGTCGTGCCATT
ATGGCAAACCGATTTACCTAAAACGATTTTAGCTAAAGAGCAACATCGCCTGTATTTATTTCTACGTCAAATTCAGGCTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATTATATTTATCCGAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

95.882

100

0.959

Multiple sequence alignment