Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   K6J69_RS00260 Genome accession   NZ_AP018777
Coordinates   56444..57127 (-) Length   227 a.a.
NCBI ID   WP_065245144.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51444..62127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS00245 (CHBNIII6_00490) nrdR 52233..52682 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  K6J69_RS00250 (CHBNIII6_00500) recC 52765..56118 (-) 3354 WP_110431331.1 exodeoxyribonuclease V subunit gamma -
  K6J69_RS00255 (CHBNIII6_00510) comQ 56164..56451 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  K6J69_RS00260 (CHBNIII6_00520) comP 56444..57127 (-) 684 WP_065245144.1 DUF2572 family protein Machinery gene
  K6J69_RS00265 (CHBNIII6_00530) comO 57127..57843 (-) 717 WP_065245143.1 type II secretion system protein J Machinery gene
  K6J69_RS00270 (CHBNIII6_00540) comN 57843..58355 (-) 513 WP_041175282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  K6J69_RS00275 (CHBNIII6_00550) suhB 58555..59358 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  K6J69_RS00280 (CHBNIII6_00560) nrfE 59468..61375 (+) 1908 WP_110431332.1 heme lyase NrfEFG subunit NrfE -
  K6J69_RS00285 (CHBNIII6_00570) - 61375..61905 (+) 531 WP_050838191.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25546.30 Da        Isoelectric Point: 9.3167

>NTDB_id=71161 K6J69_RS00260 WP_065245144.1 56444..57127(-) (comP) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MTTQKGIITLTILIFISGLLSVILLLDDSHLSFFRAQQNQRKHYVERTLQLQRITALKKQTACLDLPLNNDESVKQISIT
LDGATDSIQYFLWCERISLFKKSPKKGDNQGALKDFIHTEKLTDFRPHFSSPPRILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITNGNLTLDGVTLAYGKKTVVTLVRQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=71161 K6J69_RS00260 WP_065245144.1 56444..57127(-) (comP) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGACAACACAAAAAGGCATTATTACGCTGACTATTCTGATTTTTATTTCAGGCTTATTAAGCGTAATCTTATTGTTAGA
TGATAGCCATTTAAGTTTTTTTCGGGCTCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAATTACAAAGAA
TAACAGCCTTGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATGATGAAAGTGTAAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATAAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTCATTCACACAGAAAAACTTACAGATTTTCGACCGCACTTTTCTTCCCCACCCA
GAATTTTAAACGCGAATAAAACACCTAAACTTTATTGGTTTTCAGATTCACAAGCGGAAGTTGAAATTAATGGCACTGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCGCAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTAGTAACCTTAGTTCGACAATATAGCCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

90.308

100

0.903

Multiple sequence alignment