Detailed information NTG0711589

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: NM620_RS12135
• Genome accession: NZ_CP101694
• Coordinates: 2583098..2586475 (+)
• Length: 1125 a.a.
• NCBI ID: WP_256383261.1
• Uniprot ID: -
• Organism: Photobacterium toruni strain WD2103
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2578098..2591475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NM620_RS12120	hemL	2578881..2580185 (+)	1305	WP_080176269.1	glutamate-1-semialdehyde 2,1-aminomutase	-
NM620_RS12125	-	2580567..2581652 (+)	1086	WP_080176270.1	AI-2E family transporter	-
NM620_RS12130	rsmC	2581809..2582828 (+)	1020	WP_080176271.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
NM620_RS12135	chiS	2583098..2586475 (+)	3378	WP_256383261.1	response regulator	Regulator
NM620_RS12140	-	2587220..2588896 (+)	1677	WP_256383262.1	ABC transporter substrate-binding protein	-
NM620_RS12145	-	2589044..2590030 (+)	987	WP_256383263.1	ABC transporter permease	-
NM620_RS12150	-	2590033..2591061 (+)	1029	WP_080176275.1	ABC transporter permease	-

Sequence

Protein

• Length: 1125 a.a.
• Molecular weight: 127095.04 Da
• Isoelectric Point: 6.6886

>NTDB_id=711589 NM620_RS12135 WP_256383261.1 2583098..2586475(+) (chiS) [Photobacterium toruni strain WD2103]
MQNTKRFKRLQHTLMLAFLVLSITPLILSALYFLNSHTKDLAEQSINHLASLRDNKHKQLQSFFTAKESEVKSFARSELS
NNSGGRFYGLVGAFHQLGNIDSQLDAQGRANYFNSTLTTKSNQTANSGYLGHERYRLMFKRYNAVYNEYLKRSDFKDIIL
VDISGDVVYSVKNHGLFGVNLLAKNTSHIALQKTFAAIKKKTQQNPNNPEQVPVVFTDFSTNQHNNDTTAWFAAPIIQQG
YLHSYVFMELSNQKITELIQDNTKHIQTLLVGSDHKLRFETQTTLPIQLQSQSINQALAGNSGIGSFINYDNIPVLGAFS
PLNILNHHWALVVELPEKEAFARIFELEKIFVAAMVSAIILVIITSHWLSNSITAPLLRLTWAAEKASGGDLEQKIDGTE
RPDEIGRLAISFARMQRSIREKIGLIRQQNKELEHNLTIIRQQNNELQTADKMKDEFLATTSHELRTPLHGMVGIAESLL
AGANGALHQSQRRQLEMIINSGQRLTTLVDDLLDYHKMRYGDLDINHQAVDISVAIRLVLELSSHLLGNKPIRIINQIPT
DLPLVDADEQRLEQVLYNLVGNAIKYTSEGKIILSATVLEHQLRIQVVDTGQGIPSEQLEHIFEPLIQANTGSANYRQGA
GLGLSISRQLIELMGGRLYVSSQQMIGTTFSFTLNLANANQIAAMAANPNNNHFKAPLLNAANYDASDLPENPDGELLLI
VDDEPVNLQILTNFLRLAGYRVQTAESGPQALILIAKQQPDLVLLDIMMPEMSGYEVCNKLRQTHSMLELPIIMLSALGQ
VQDRLKGFECGANDYLTKPFNKEELMARIRAYLQAGKTEIERKKNHALEQEIHRREQVEIGLLETQSRLLGLLDSTSEAI
ICVQQEGRIRYANSAAGKLFKRAPELLERYTIDDILVTPLPIAITDNHHFNGYLNYYIGEQQQQLMTDIINLPIESGLKQ
MFVFDSQGPSADHRIHLLESAIDVLSEFTFNGDKNNLQQLRELGGEFTRLADKLGDGEHNKTEIIRQLLVDSMKATLLFW
EAESHKSKFELAEESGLWRVYLDRSTLQTRTLDKYLQLETLPKTPRWRTVINTIDFVLDRCPQPNTSRQELVIMRDKLHH
IISHH

Nucleotide

• Length: 3378 bp

>NTDB_id=711589 NM620_RS12135 WP_256383261.1 2583098..2586475(+) (chiS) [Photobacterium toruni strain WD2103]
ATGCAGAATACTAAACGGTTCAAACGTCTTCAGCACACACTTATGCTCGCATTTTTAGTTCTCAGTATCACTCCGCTGAT
ATTGTCGGCACTCTATTTCCTTAATTCTCATACTAAAGATTTGGCAGAACAGAGCATCAACCACCTTGCTTCATTGCGTG
ATAATAAACATAAACAATTACAGAGTTTCTTTACAGCTAAAGAATCAGAAGTGAAAAGTTTCGCGCGATCAGAGCTATCA
AATAACAGTGGCGGAAGATTTTACGGTTTAGTTGGCGCATTCCATCAATTAGGTAATATTGATTCACAACTTGATGCTCA
AGGTCGCGCTAATTATTTTAATTCAACCCTTACCACTAAAAGCAATCAAACAGCGAATAGTGGTTATCTTGGTCATGAGC
GTTACCGATTAATGTTTAAACGGTATAACGCCGTTTATAATGAGTACCTAAAACGCTCTGATTTCAAAGATATTATACTC
GTCGATATTTCTGGTGATGTTGTTTACTCAGTTAAAAATCATGGTCTTTTTGGGGTTAATCTATTAGCTAAAAACACCTC
TCACATAGCTTTACAGAAAACCTTTGCGGCCATTAAAAAGAAAACACAACAAAATCCCAATAATCCAGAACAAGTCCCTG
TTGTGTTTACTGACTTTAGTACCAATCAACACAATAATGATACAACAGCATGGTTTGCCGCACCGATTATTCAACAAGGC
TACCTACATAGTTATGTCTTTATGGAACTAAGTAACCAAAAGATCACCGAACTAATCCAAGACAATACTAAGCATATTCA
AACCCTATTAGTCGGTAGTGATCATAAATTACGTTTTGAAACACAAACTACATTGCCAATACAATTACAAAGCCAAAGTA
TCAATCAAGCTCTTGCTGGTAACTCCGGCATTGGTAGCTTTATTAACTATGACAATATTCCAGTATTAGGCGCATTTTCA
CCGCTAAATATATTAAATCACCACTGGGCATTGGTGGTTGAACTTCCAGAAAAAGAAGCCTTTGCGCGTATCTTTGAGTT
AGAAAAAATCTTTGTTGCGGCCATGGTTTCCGCCATTATTTTAGTGATCATTACTTCACATTGGCTCTCAAATTCTATTA
CAGCACCATTATTACGCTTAACTTGGGCCGCAGAAAAAGCCTCTGGTGGTGATTTAGAGCAAAAAATTGATGGCACTGAA
CGCCCCGATGAAATTGGACGGCTAGCGATCAGCTTTGCCCGTATGCAACGCTCAATTCGTGAGAAAATTGGTCTTATTCG
GCAACAAAATAAAGAGTTAGAGCATAACCTAACGATTATTCGTCAACAAAATAATGAACTGCAAACTGCAGATAAAATGA
AAGATGAATTTCTAGCCACAACATCACACGAATTGCGTACTCCATTGCATGGTATGGTGGGAATTGCAGAGTCTTTATTA
GCGGGAGCTAATGGTGCATTACATCAATCACAACGACGCCAATTAGAAATGATCATCAATAGTGGTCAACGTTTAACTAC
ACTCGTTGATGATCTGCTTGATTACCACAAAATGCGTTATGGCGATCTTGATATTAACCATCAAGCGGTTGATATATCAG
TAGCTATTCGCTTGGTTCTAGAATTATCAAGCCATTTGTTAGGTAATAAACCAATTCGAATTATTAATCAAATTCCAACG
GATCTCCCTCTCGTTGATGCCGATGAACAACGCCTAGAACAAGTGCTTTATAACTTGGTTGGTAATGCAATTAAATATAC
CTCTGAAGGTAAAATCATCTTATCGGCAACGGTATTAGAGCACCAATTACGTATTCAAGTTGTTGATACTGGACAAGGTA
TTCCTAGCGAACAATTGGAGCATATTTTTGAGCCACTTATTCAAGCTAATACGGGATCAGCAAATTACCGTCAAGGCGCA
GGACTTGGGTTATCAATTAGTCGTCAATTGATTGAACTTATGGGCGGGCGATTATATGTGAGTAGCCAACAAATGATTGG
TACCACCTTTAGTTTTACCCTTAATTTAGCCAATGCGAATCAAATCGCAGCCATGGCAGCAAACCCTAATAATAATCACT
TTAAAGCACCACTATTAAATGCGGCAAATTATGATGCGTCTGATTTACCTGAAAATCCAGATGGTGAATTATTACTGATT
GTTGATGATGAGCCTGTCAATTTACAAATATTAACCAATTTCTTACGTCTTGCAGGTTATCGTGTTCAAACCGCAGAAAG
CGGCCCTCAAGCATTAATTTTGATTGCTAAACAACAGCCAGATTTAGTACTGCTTGATATTATGATGCCTGAAATGAGTG
GCTATGAAGTCTGTAATAAATTACGACAAACACATTCAATGTTGGAATTACCAATCATCATGTTATCAGCACTGGGGCAA
GTACAAGATCGCTTAAAAGGATTTGAATGTGGCGCCAATGACTATTTAACCAAACCGTTTAATAAAGAAGAGTTAATGGC
GCGTATTCGCGCCTATCTTCAAGCAGGTAAAACTGAAATTGAACGCAAAAAAAACCACGCGTTAGAACAAGAAATTCATC
GTCGTGAACAAGTTGAAATCGGTCTTTTAGAAACTCAAAGTCGTTTACTAGGATTATTAGATTCAACCAGTGAGGCTATT
ATTTGTGTGCAGCAGGAAGGTCGCATTCGGTACGCTAATAGCGCCGCTGGCAAACTGTTTAAACGCGCACCTGAATTATT
AGAACGTTATACCATTGATGATATTTTAGTCACACCATTACCAATCGCAATCACTGATAATCATCATTTTAATGGTTATC
TAAATTATTATATTGGTGAGCAACAGCAACAATTAATGACCGATATCATCAATTTACCTATAGAGTCCGGACTCAAACAA
ATGTTTGTTTTTGATAGCCAAGGACCATCAGCTGATCACCGTATTCATCTACTTGAAAGTGCGATTGATGTGTTATCTGA
ATTTACATTTAATGGCGATAAAAATAACCTTCAGCAGCTGCGAGAACTTGGCGGCGAATTTACCCGTTTGGCAGATAAAC
TTGGTGATGGAGAACACAACAAAACTGAAATAATTCGCCAATTATTAGTCGATTCAATGAAAGCAACCCTACTATTTTGG
GAAGCAGAATCTCATAAAAGTAAGTTTGAATTGGCGGAAGAGAGTGGTTTATGGCGAGTCTATTTAGATCGTAGTACGCT
TCAAACTCGAACGTTAGATAAATACCTTCAGCTTGAAACGTTACCCAAAACACCTCGTTGGCGAACCGTTATTAATACGA
TTGATTTTGTATTAGACCGTTGTCCACAACCTAATACTAGCCGCCAAGAACTAGTAATAATGCGAGATAAATTACATCAC
ATTATTAGTCATCACTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (719-830)

• HAMP domain (HAMP) (368-421)

• His Kinase A (phospho-acceptor) domain (HisKA) (453-519)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (568-677)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	56.067	100	0.563