Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NM620_RS01890 Genome accession   NZ_CP101694
Coordinates   381114..382334 (-) Length   406 a.a.
NCBI ID   WP_256383600.1    Uniprot ID   -
Organism   Photobacterium toruni strain WD2103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376114..387334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM620_RS01865 mutT 378024..378461 (-) 438 WP_256383597.1 8-oxo-dGTP diphosphatase MutT -
  NM620_RS01870 yacG 378581..378781 (-) 201 WP_080174490.1 DNA gyrase inhibitor YacG -
  NM620_RS01875 zapD 378789..379526 (-) 738 WP_080174491.1 cell division protein ZapD -
  NM620_RS01880 coaE 379573..380178 (-) 606 WP_256383598.1 dephospho-CoA kinase -
  NM620_RS01885 pilD 380182..381054 (-) 873 WP_256383599.1 A24 family peptidase Machinery gene
  NM620_RS01890 pilC 381114..382334 (-) 1221 WP_256383600.1 type II secretion system F family protein Machinery gene
  NM620_RS01895 pilB 382388..384073 (-) 1686 WP_256383601.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NM620_RS01900 - 384076..384465 (-) 390 WP_256383602.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NM620_RS01905 - 384961..386337 (-) 1377 WP_256383603.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45288.23 Da        Isoelectric Point: 9.4782

>NTDB_id=711568 NM620_RS01890 WP_256383600.1 381114..382334(-) (pilC) [Photobacterium toruni strain WD2103]
MVAATKIRYYQWRGINQAGRKVSGVTMGFQEQEVRHQLTEQMINVKKIKRTSPGTLDRLRNQMKPEDVTMVTRQLSTMVE
SGVPVVQALTLMANSHHKAEMRATLIQVTNQVEAGSSLAKAMRSSSPLFDKFYCDLVDTGEQTGHLGQVFGRIAVYREKA
EAMRKKIIKAMIYPSMVSITAILVTVLMLVFVIPQFAAIFSGFGAELPWFTRQVMKASDFLVNYGTYLGAAIVVAVLLFR
YCYKHYYRFHYRIDKLSLKLPLVGGVLLKATISRFARTLATTFNAGIPLLTGIQSAAKTSNNLYIEQAIDDVYNNTAAGM
PLYLALRQADVFPELMLQMVMIGEESGALDDMLNKMAQLYEDDVDNTVDNLGQILEPFIIIILGTIIGGLLVAMYMPIFT
LMSVIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=711568 NM620_RS01890 WP_256383600.1 381114..382334(-) (pilC) [Photobacterium toruni strain WD2103]
ATGGTTGCTGCCACTAAAATTCGTTACTACCAATGGCGGGGCATCAATCAAGCCGGACGCAAAGTCTCAGGCGTCACAAT
GGGATTTCAAGAACAAGAAGTTCGCCATCAGCTCACCGAGCAAATGATCAATGTTAAAAAGATCAAACGCACCTCTCCCG
GCACTTTAGATCGACTTCGTAATCAAATGAAGCCCGAAGATGTCACCATGGTGACGCGTCAATTATCGACCATGGTTGAA
TCAGGCGTTCCTGTAGTACAAGCATTAACTTTAATGGCAAATAGCCACCACAAAGCAGAAATGCGTGCCACCCTAATTCA
GGTAACCAACCAAGTTGAAGCGGGATCATCATTAGCCAAAGCAATGCGCTCTAGCTCACCTTTGTTTGATAAATTTTATT
GTGACTTGGTTGATACGGGTGAGCAAACCGGACACCTTGGACAAGTCTTTGGTCGCATTGCGGTGTATCGCGAAAAAGCT
GAAGCGATGCGCAAAAAGATCATTAAAGCGATGATCTACCCCTCTATGGTATCGATCACCGCAATATTAGTCACCGTACT
CATGTTGGTGTTTGTAATTCCGCAATTTGCCGCAATTTTTAGTGGCTTTGGCGCAGAACTGCCATGGTTTACTCGTCAAG
TAATGAAAGCTTCAGACTTTCTGGTTAACTACGGGACTTATCTAGGGGCTGCCATTGTGGTGGCTGTACTGCTGTTTCGC
TACTGTTATAAGCATTATTACCGCTTCCACTATCGCATTGATAAACTGAGCCTAAAGTTACCACTTGTCGGTGGAGTATT
ACTTAAAGCAACCATTTCCCGTTTTGCACGAACGCTTGCCACCACCTTTAATGCTGGTATTCCACTGTTAACGGGTATTC
AATCTGCAGCTAAAACCAGTAATAATCTTTATATTGAGCAAGCAATTGATGACGTTTATAACAACACCGCAGCGGGTATG
CCTTTATACTTAGCTCTACGTCAAGCTGATGTTTTCCCAGAATTAATGCTACAGATGGTAATGATTGGTGAAGAATCTGG
CGCACTTGATGATATGCTCAATAAAATGGCACAATTGTACGAAGATGATGTCGATAATACTGTCGATAACCTTGGTCAAA
TTCTAGAACCGTTTATTATCATTATTCTCGGTACCATTATCGGTGGTTTATTGGTCGCGATGTACATGCCTATTTTCACG
CTAATGAGCGTTATAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

54.25

98.522

0.534
  pilC Vibrio campbellii strain DS40M4

50.868

99.261

0.505
  pilC Pseudomonas stutzeri DSM 10701

40.05

99.015

0.397
  pilG Neisseria meningitidis 44/76-A

39.95

99.261

0.397
  pilG Neisseria gonorrhoeae MS11

39.95

99.261

0.397
  pilC Acinetobacter baylyi ADP1

40.05

97.783

0.392
  pilC Acinetobacter baumannii D1279779

39.798

97.783

0.389
  pilC Legionella pneumophila strain ERS1305867

39.394

97.537

0.384