Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NOV91_RS21060 Genome accession   NZ_CP101689
Coordinates   4363696..4364301 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Mbandaka strain SMEH     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4358696..4369301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV91_RS21040 (NOV91_21040) - 4359091..4360851 (-) 1761 WP_000156448.1 Lon protease family protein -
  NOV91_RS21045 (NOV91_21045) matP 4361037..4361489 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  NOV91_RS21050 (NOV91_21050) ompA 4361561..4362613 (-) 1053 WP_001670727.1 porin OmpA -
  NOV91_RS21055 (NOV91_21055) sulA 4362970..4363479 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  NOV91_RS21060 (NOV91_21060) sxy/tfoX 4363696..4364301 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  NOV91_RS21065 (NOV91_21065) yccS 4364288..4366441 (-) 2154 WP_000950881.1 YccS family putative transporter -
  NOV91_RS21070 (NOV91_21070) - 4366460..4366906 (-) 447 WP_017440927.1 YccF domain-containing protein -
  NOV91_RS21075 (NOV91_21075) helD 4367030..4369084 (+) 2055 WP_017440928.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=711560 NOV91_RS21060 WP_001202375.1 4363696..4364301(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Mbandaka strain SMEH]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=711560 NOV91_RS21060 WP_001202375.1 4363696..4364301(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Mbandaka strain SMEH]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751