Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NO469_RS02640 Genome accession   NZ_CP101685
Coordinates   570883..572550 (+) Length   555 a.a.
NCBI ID   WP_250200935.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain L.S.05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 565883..577550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO469_RS02610 (NO469_02610) folD 566265..567122 (+) 858 WP_250200931.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  NO469_RS02615 (NO469_02615) xseA 567115..568455 (+) 1341 WP_250200932.1 exodeoxyribonuclease VII large subunit -
  NO469_RS02620 (NO469_02620) - 568455..568682 (+) 228 WP_250200933.1 exodeoxyribonuclease VII small subunit -
  NO469_RS02625 (NO469_02625) - 568648..569565 (+) 918 WP_003709870.1 polyprenyl synthetase family protein -
  NO469_RS02630 (NO469_02630) - 569568..570395 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  NO469_RS02635 (NO469_02635) - 570420..570878 (+) 459 WP_003699854.1 arginine repressor -
  NO469_RS02640 (NO469_02640) recN 570883..572550 (+) 1668 WP_250200935.1 DNA repair protein RecN Machinery gene
  NO469_RS02645 (NO469_02645) lexA 572614..573234 (-) 621 WP_003705933.1 transcriptional repressor LexA -
  NO469_RS02650 (NO469_02650) - 573345..573635 (+) 291 WP_003699858.1 DUF896 domain-containing protein -
  NO469_RS02655 (NO469_02655) - 573762..573986 (+) 225 WP_003705934.1 YneF family protein -
  NO469_RS02660 (NO469_02660) yihA 574069..574659 (+) 591 WP_003699861.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NO469_RS02665 (NO469_02665) - 574677..574976 (+) 300 WP_003705935.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  NO469_RS02670 (NO469_02670) - 575081..576895 (+) 1815 WP_250200936.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63265.03 Da        Isoelectric Point: 4.8501

>NTDB_id=711506 NO469_RS02640 WP_250200935.1 570883..572550(+) (recN) [Ligilactobacillus salivarius strain L.S.05]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSELRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIREAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDVARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIVKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLEELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=711506 NO469_RS02640 WP_250200935.1 570883..572550(+) (recN) [Ligilactobacillus salivarius strain L.S.05]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTACTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTAGCAACTTTACGAAAGGTAGGAGAAACATTAATAGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAATCATATAGATTTGTTAGATGAATATGATAAAAAAACATCTGAATTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTAGAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTAG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAGAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGTCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAACGAAATAGAGGAAAGACTAGAGTTGATTCATCAATTGAAAAGAAAATATGGTGATACGATA
GAGGATATTTTGCATTATCATAGTAGAATTGTAAAAGAATTAAGAGAAATGGAGAATGCGGAACAAAATTCAGAAAAGCA
AGAGAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATTCATGAACAATTAAGTGCATTATATATGGACAAAGCCGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTGTATTCTAAAGGTATTGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGACCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGCGTCA
CAAGTATTATCTTTGATGAGGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTATTATATTTCAAA
ATCTGTTAACGATGGTAGAACAGAAACTTCATTAGAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACGTTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.902

100

0.494