Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NO469_RS01860 Genome accession   NZ_CP101685
Coordinates   443667..445484 (+) Length   605 a.a.
NCBI ID   WP_250200893.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain L.S.05     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 438667..450484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO469_RS01845 (NO469_01845) - 440110..441756 (+) 1647 WP_250200892.1 phosphoenolpyruvate carboxykinase (ATP) -
  NO469_RS01850 (NO469_01850) - 441860..442621 (+) 762 WP_101898228.1 adaptor protein MecA -
  NO469_RS01855 (NO469_01855) - 442670..443569 (+) 900 WP_161023073.1 competence protein CoiA -
  NO469_RS01860 (NO469_01860) pepF 443667..445484 (+) 1818 WP_250200893.1 oligoendopeptidase F Regulator
  NO469_RS01865 (NO469_01865) - 445574..446170 (-) 597 WP_162853479.1 ClpXP adapter SpxH family protein -
  NO469_RS01870 (NO469_01870) - 446349..447206 (+) 858 WP_250200894.1 phosphate ABC transporter substrate-binding protein -
  NO469_RS01875 (NO469_01875) pstC 447217..448134 (+) 918 WP_250200895.1 phosphate ABC transporter permease subunit PstC -
  NO469_RS01880 (NO469_01880) pstA 448134..449024 (+) 891 WP_003708300.1 phosphate ABC transporter permease PstA -
  NO469_RS01885 (NO469_01885) pstB 449029..449823 (+) 795 WP_003702915.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70515.60 Da        Isoelectric Point: 5.3586

>NTDB_id=711502 NO469_RS01860 WP_250200893.1 443667..445484(+) (pepF) [Ligilactobacillus salivarius strain L.S.05]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQAVKDEVQNFRKLQGTTDQGSQRFLQIIENFLSINRKFEKVYV
YASMKNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKLKQYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHGVYGKLIESTNREVRKVAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNDEKEILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLELNKKYYGSDVISDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=711502 NO469_RS01860 WP_250200893.1 443667..445484(+) (pepF) [Ligilactobacillus salivarius strain L.S.05]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTTGAAAAGGAGTACCAAGCTGTAAAAGATGAAGTACAGAACTTCAGAAAATTACAAGGTACAA
CGGATCAAGGTAGTCAAAGATTTTTACAAATTATTGAAAATTTCTTAAGTATTAATAGGAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAAAAATGATCAAGATACTACAAACGCTAAGTATCAAGGATATAATGAAATGGTTGATGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTCGAACCTGAGTTACTAGAATTAGATGAAGATAAATTAAAGCAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAACATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGGACATCGCAAAATGTTTTTGGCATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGGAAGTTAGAAAAGTTGCATTCAAGGGATTATACAGTGTTTATGACCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTGCATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
TCATATTCCAACAGAAGTCTATGATGTTTTACTGGAACAAGTACACAAAAATCTTCCTTTACTACATCGCTATGTAAAAC
TTAGAAAGAAGATATTAGGTGTCGATGAACTCCATATGTATGATATGTATACACCGTTAACTGAAGATAGTAAGCTTACT
TACAATTACATTCAAGCACAAATTGAAGCTAAAAAAGCACTTGAAGTATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGTGGAGCATATTCATCAGGAGTTTATGATA
CTCCGCCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACCTTGGTACATGAGATGGGACATAGTATG
CATAGTTATTACACTAGTCATAATCAACCCTATCAGTATGGAGATTACCCAATATTTTTGGCAGAAATAGCTTCAACTAC
TAATGAAAATATTTTGACGGATTATCTATTAAAGAATAACGATGAAAAAGAGATATTAATCTATATTTTAAATCATTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAGAATTCGAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAATATTACTTAGAATTAAATAAGAAATATTATGGTAGTGATGTGATAAG
TGATCCTGAAATAGCTTTAGAATGGGCTAGAATTCCGCATTTCTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCGGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGCGATGAAAATAAATTAAACAAATATTTAACTTACTTAAAA
GCTGGTAGTAGTAAATATCCATTGGAAGTCATGAAAGATGCAGGTGTGGATATGACAGATTCTTCATATTTGGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.378

97.851

0.522