Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NO473_RS06285 Genome accession   NZ_CP101666
Coordinates   1248487..1249116 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain M171-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1243487..1254116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO473_RS06270 helD 1243729..1245783 (-) 2055 WP_130062315.1 DNA helicase IV -
  NO473_RS06275 yccF 1245906..1246352 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NO473_RS06280 yccS 1246362..1248524 (+) 2163 WP_000875061.1 YccS family putative transporter -
  NO473_RS06285 sxy/tfoX 1248487..1249116 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NO473_RS06290 sulA 1249335..1249844 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NO473_RS06295 ompA 1250201..1251241 (+) 1041 WP_000750416.1 porin OmpA -
  NO473_RS06300 matP 1251317..1251769 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NO473_RS06305 ycbZ 1251955..1253715 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=711475 NO473_RS06285 WP_000839153.1 1248487..1249116(-) (sxy/tfoX) [Escherichia coli strain M171-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=711475 NO473_RS06285 WP_000839153.1 1248487..1249116(-) (sxy/tfoX) [Escherichia coli strain M171-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1