Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   POF56_RS05340 Genome accession   NZ_CP116710
Coordinates   1040856..1041818 (-) Length   320 a.a.
NCBI ID   WP_000735584.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain A909 dCas9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1035856..1046818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF56_RS05320 (POF56_05320) dprA 1037057..1037899 (-) 843 WP_001015245.1 DNA-processing protein DprA Machinery gene
  POF56_RS05325 (POF56_05325) - 1038037..1039065 (-) 1029 WP_000162771.1 siderophore ABC transporter substrate-binding protein -
  POF56_RS05330 (POF56_05330) - 1039127..1039888 (-) 762 WP_000614752.1 ATP-binding cassette domain-containing protein -
  POF56_RS05335 (POF56_05335) - 1039885..1040859 (-) 975 WP_000588585.1 iron chelate uptake ABC transporter family permease subunit -
  POF56_RS05340 (POF56_05340) ceuB 1040856..1041818 (-) 963 WP_000735584.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  POF56_RS05345 (POF56_05345) - 1042057..1042605 (-) 549 WP_000136503.1 sugar O-acetyltransferase -
  POF56_RS05350 (POF56_05350) - 1042626..1043387 (-) 762 WP_000201090.1 ribonuclease HII -
  POF56_RS05355 (POF56_05355) ylqF 1043374..1044225 (-) 852 WP_000201279.1 ribosome biogenesis GTPase YlqF -
  POF56_RS05360 (POF56_05360) - 1044501..1045073 (-) 573 WP_001231795.1 L,D-transpeptidase -
  POF56_RS05365 (POF56_05365) - 1045274..1046758 (-) 1485 WP_000256021.1 carbon starvation CstA family protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34893.03 Da        Isoelectric Point: 8.4842

>NTDB_id=711475 POF56_RS05340 WP_000735584.1 1040856..1041818(-) (ceuB) [Streptococcus agalactiae strain A909 dCas9]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLASRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAVTVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGIAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISITKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=711475 POF56_RS05340 WP_000735584.1 1040856..1041818(-) (ceuB) [Streptococcus agalactiae strain A909 dCas9]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTTAA
ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAGCGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTGATGCAACAACTCACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATAGCTTCAGGTTTTGCCATTTTAGGATCGCTTCTTTTTGTAACCATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGTAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTGTATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AAAATTTAGGGATTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCATAACTAAAGGAGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTGGGTAGTGCCTTTTTCTTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.962

99.688

0.478