Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   POF56_RS02480 Genome accession   NZ_CP116710
Coordinates   433797..434573 (-) Length   258 a.a.
NCBI ID   WP_000704976.1    Uniprot ID   Q3K2X2
Organism   Streptococcus agalactiae strain A909 dCas9     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 428797..439573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF56_RS02475 (POF56_02475) - 433180..433713 (-) 534 WP_001239184.1 DUF402 domain-containing protein -
  POF56_RS02480 (POF56_02480) recX 433797..434573 (-) 777 WP_000704976.1 recombination regulator RecX Regulator
  POF56_RS02485 (POF56_02485) rlmD 434672..436027 (+) 1356 WP_001103616.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  POF56_RS02490 (POF56_02490) - 436296..437060 (+) 765 WP_000586353.1 nucleoside phosphorylase -
  POF56_RS02495 (POF56_02495) - 437094..437522 (+) 429 WP_000267398.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30745.65 Da        Isoelectric Point: 9.7605

>NTDB_id=711445 POF56_RS02480 WP_000704976.1 433797..434573(-) (recX) [Streptococcus agalactiae strain A909 dCas9]
MKITKIEKKKRLYTLELDNTENLYITEDTIVHFMLSKGMIVNAEKLENIKKFAQLSYGKNLGLYYISFKQRTEKELIKYL
QQHDIDSKIIPQIIDNLKSENWINDKNYVQSFIQQNLNTGDKGPYVIKQKLLQKGIKSKIIESELQAINFQDLASKISQK
LYKKYQNKLPLKALKDKLMQSLTTKGFDYQIAHTVIQNLEIEKDQELEEDLIYKELDKQYQKFSKKYDQYELKQRIINAL
MRKGYQYEDIKSALREYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=711445 POF56_RS02480 WP_000704976.1 433797..434573(-) (recX) [Streptococcus agalactiae strain A909 dCas9]
ATGAAAATAACCAAAATCGAAAAGAAAAAAAGACTTTACACTCTAGAGCTAGACAATACCGAAAATTTATATATAACAGA
AGATACTATCGTTCATTTTATGTTAAGTAAAGGGATGATAGTTAATGCCGAGAAACTTGAAAATATTAAAAAATTTGCCC
AACTATCATATGGTAAAAATCTAGGTCTTTATTATATTTCTTTCAAGCAGAGAACCGAGAAAGAACTTATTAAATATCTT
CAACAACATGATATTGATTCTAAAATTATTCCACAAATTATTGATAATCTAAAAAGTGAGAATTGGATAAACGATAAAAA
CTACGTGCAATCTTTCATACAGCAAAATCTAAATACTGGCGATAAGGGGCCATACGTGATAAAACAAAAATTATTGCAAA
AAGGTATCAAAAGTAAAATAATTGAATCTGAACTTCAAGCTATAAATTTTCAAGACTTAGCATCCAAAATAAGCCAAAAA
CTCTATAAAAAATATCAAAACAAACTTCCACTAAAAGCATTAAAAGATAAATTGATGCAGAGCTTAACTACAAAAGGATT
TGATTATCAGATAGCGCATACCGTAATTCAAAACCTTGAAATTGAAAAAGATCAAGAACTTGAAGAAGACCTCATTTATA
AAGAATTAGATAAACAATACCAAAAATTCTCAAAAAAATATGACCAGTATGAATTAAAGCAACGTATAATCAATGCCTTA
ATGCGTAAAGGATACCAGTACGAAGATATCAAAAGTGCTTTAAGAGAATATTTATAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K2X2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

37.931

100

0.384