Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NO220_RS07195 Genome accession   NZ_CP101661
Coordinates   1376459..1376743 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B408     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1371459..1381743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS07175 (NO220_07175) - 1372694..1373614 (+) 921 WP_043867056.1 ketopantoate reductase family protein -
  NO220_RS07180 (NO220_07180) - 1373644..1374876 (-) 1233 WP_043867057.1 aminopeptidase -
  NO220_RS07185 (NO220_07185) - 1374977..1375111 (-) 135 WP_003154559.1 protein YkpC -
  NO220_RS07190 (NO220_07190) mreBH 1375183..1376190 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  NO220_RS07195 (NO220_07195) abrB 1376459..1376743 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NO220_RS07200 (NO220_07200) - 1376916..1378220 (+) 1305 WP_014304932.1 ATP-binding protein -
  NO220_RS07205 (NO220_07205) - 1378222..1379049 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  NO220_RS07210 (NO220_07210) ktrC 1379090..1379755 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  NO220_RS07215 (NO220_07215) ade 1379904..1381637 (+) 1734 WP_256079493.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=711426 NO220_RS07195 WP_024085249.1 1376459..1376743(+) (abrB) [Bacillus amyloliquefaciens strain B408]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=711426 NO220_RS07195 WP_024085249.1 1376459..1376743(+) (abrB) [Bacillus amyloliquefaciens strain B408]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543