Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NO220_RS06985 Genome accession   NZ_CP101661
Coordinates   1340084..1340548 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain B408     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335084..1345548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS06965 (NO220_06965) - 1335564..1337384 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  NO220_RS06970 (NO220_06970) - 1337410..1338579 (-) 1170 WP_256079471.1 aminotransferase A -
  NO220_RS06975 (NO220_06975) - 1338780..1338941 (-) 162 WP_007409608.1 hypothetical protein -
  NO220_RS06980 (NO220_06980) cheV 1339130..1340041 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  NO220_RS06985 (NO220_06985) kre 1340084..1340548 (-) 465 WP_003154622.1 YkyB family protein Regulator
  NO220_RS06990 (NO220_06990) - 1340671..1341963 (-) 1293 WP_043867050.1 MFS transporter -
  NO220_RS06995 (NO220_06995) - 1342039..1342533 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  NO220_RS07000 (NO220_07000) - 1342608..1343474 (-) 867 WP_043867051.1 metallophosphoesterase -
  NO220_RS07005 (NO220_07005) fadH 1343618..1344382 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  NO220_RS07010 (NO220_07010) - 1344493..1345041 (+) 549 Protein_1319 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=711424 NO220_RS06985 WP_003154622.1 1340084..1340548(-) (kre) [Bacillus amyloliquefaciens strain B408]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=711424 NO220_RS06985 WP_003154622.1 1340084..1340548(-) (kre) [Bacillus amyloliquefaciens strain B408]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929