Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   NO220_RS05560 Genome accession   NZ_CP101661
Coordinates   1070750..1070941 (+) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus amyloliquefaciens strain B408     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1065750..1075941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS05530 (NO220_05530) argF 1066603..1067574 (+) 972 WP_043866982.1 ornithine carbamoyltransferase -
  NO220_RS05535 (NO220_05535) - 1067650..1067829 (+) 180 WP_003155070.1 YjzC family protein -
  NO220_RS05540 (NO220_05540) - 1067865..1068050 (-) 186 WP_003155069.1 YjzD family protein -
  NO220_RS05545 (NO220_05545) - 1068311..1069045 (+) 735 WP_043866983.1 hypothetical protein -
  NO220_RS05550 (NO220_05550) - 1069128..1069694 (+) 567 WP_043866984.1 hypothetical protein -
  NO220_RS05555 (NO220_05555) med 1069784..1070737 (+) 954 WP_003155063.1 BMP family ABC transporter substrate-binding protein Regulator
  NO220_RS05560 (NO220_05560) comZ 1070750..1070941 (+) 192 WP_003155061.1 ComZ family protein Regulator
  NO220_RS05565 (NO220_05565) - 1070971..1071189 (-) 219 WP_003155059.1 hypothetical protein -
  NO220_RS05570 (NO220_05570) - 1071357..1072295 (+) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  NO220_RS05575 (NO220_05575) fabF 1072318..1073556 (+) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  NO220_RS05580 (NO220_05580) - 1073640..1074425 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  NO220_RS05585 (NO220_05585) - 1074599..1075585 (+) 987 WP_003155054.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=711417 NO220_RS05560 WP_003155061.1 1070750..1070941(+) (comZ) [Bacillus amyloliquefaciens strain B408]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=711417 NO220_RS05560 WP_003155061.1 1070750..1070941(+) (comZ) [Bacillus amyloliquefaciens strain B408]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794