Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   NO220_RS01770 Genome accession   NZ_CP101661
Coordinates   336416..336580 (+) Length   54 a.a.
NCBI ID   WP_269465305.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B408     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 331416..341580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS01765 (NO220_01765) srfAB 333307..336399 (+) 3093 Protein_307 surfactin non-ribosomal peptide synthetase SrfAB -
  NO220_RS01770 (NO220_01770) comS 336416..336580 (+) 165 WP_269465305.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6264.26 Da        Isoelectric Point: 11.7559

>NTDB_id=711403 NO220_RS01770 WP_269465305.1 336416..336580(+) (comS) [Bacillus amyloliquefaciens strain B408]
MRPRRNSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=711403 NO220_RS01770 WP_269465305.1 336416..336580(+) (comS) [Bacillus amyloliquefaciens strain B408]
ATGAGACCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGATC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5