Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NO220_RS01740 Genome accession   NZ_CP101661
Coordinates   319363..319800 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B408     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 314363..324800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS01705 (NO220_01705) - 314942..315067 (-) 126 Protein_294 hypothetical protein -
  NO220_RS01710 (NO220_01710) - 315220..316422 (+) 1203 WP_043866820.1 GTP-binding protein -
  NO220_RS01715 (NO220_01715) - 316487..317623 (+) 1137 WP_256078924.1 zinc-dependent alcohol dehydrogenase -
  NO220_RS01720 (NO220_01720) - 317638..318072 (+) 435 WP_003156592.1 RDD family protein -
  NO220_RS01725 (NO220_01725) - 318144..318464 (+) 321 WP_014304315.1 YckD family protein -
  NO220_RS19405 - 318568..318684 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  NO220_RS01730 (NO220_01730) - 318683..318902 (+) 220 Protein_300 family 1 glycosylhydrolase -
  NO220_RS01735 (NO220_01735) nin/comJ 318943..319341 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  NO220_RS01740 (NO220_01740) nucA/comI 319363..319800 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NO220_RS01745 (NO220_01745) hxlB 320159..320716 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  NO220_RS01750 (NO220_01750) hxlA 320713..321348 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  NO220_RS01755 (NO220_01755) - 321580..321942 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=711402 NO220_RS01740 WP_003156588.1 319363..319800(-) (nucA/comI) [Bacillus amyloliquefaciens strain B408]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=711402 NO220_RS01740 WP_003156588.1 319363..319800(-) (nucA/comI) [Bacillus amyloliquefaciens strain B408]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641