Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   M2043_RS17975 Genome accession   NZ_AP023433
Coordinates   3725869..3726384 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain M719     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3720869..3731384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2043_RS17950 (MYEC719_3627) ygaZ 3721268..3722005 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  M2043_RS17955 (MYEC719_3628) ygaH 3721995..3722330 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  M2043_RS17960 (MYEC719_3629) emrR 3722421..3722951 (+) 531 WP_000378447.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  M2043_RS17965 (MYEC719_3631) emrA 3723078..3724250 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  M2043_RS17970 (MYEC719_3632) emrB 3724267..3725805 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  M2043_RS17975 (MYEC719_3633) luxS 3725869..3726384 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  M2043_RS17980 (MYEC719_3634) gshA 3726534..3728090 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  M2043_RS17985 (MYEC719_3635) yqaA 3728163..3728591 (-) 429 WP_001287454.1 YqaA family protein -
  M2043_RS17990 (MYEC719_3636) yqaB 3728588..3729154 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  M2043_RS18020 (MYEC719_3637) csrA 3730612..3730797 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=71135 M2043_RS17975 WP_001130211.1 3725869..3726384(-) (luxS) [Escherichia coli strain M719]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=71135 M2043_RS17975 WP_001130211.1 3725869..3726384(-) (luxS) [Escherichia coli strain M719]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment