Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   K6J67_RS01820 Genome accession   NZ_AP018776
Coordinates   366920..367216 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain CHBN-III-5 isolate 13H30     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 361920..372216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J67_RS09155 - 363451..363576 (+) 126 Protein_351 PT domain-containing protein -
  K6J67_RS01810 (CHBNIII5_03500) - 363518..366475 (+) 2958 WP_343213414.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K6J67_RS01815 (CHBNIII5_03510) - 366745..366927 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  K6J67_RS01820 (CHBNIII5_03520) HI0659 366920..367216 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  K6J67_RS01825 (CHBNIII5_03530) - 367400..369316 (+) 1917 WP_050822748.1 ABC transporter ATP-binding protein -
  K6J67_RS01830 (CHBNIII5_03540) - 369326..369874 (+) 549 WP_050822746.1 type I DNA topoisomerase -
  K6J67_RS01835 (CHBNIII5_03550) - 369890..370441 (+) 552 WP_050822744.1 Sua5/YciO/YrdC/YwlC family protein -
  K6J67_RS01840 (CHBNIII5_03560) aroE 370445..371251 (+) 807 WP_050822741.1 shikimate dehydrogenase -
  K6J67_RS01845 (CHBNIII5_03570) - 371465..372028 (+) 564 WP_042601571.1 DNA-3-methyladenine glycosylase I -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=71133 K6J67_RS01820 WP_005650837.1 366920..367216(+) (HI0659) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=71133 K6J67_RS01820 WP_005650837.1 366920..367216(+) (HI0659) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment