Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   POF61_RS01155 Genome accession   NZ_CP116709
Coordinates   192601..192972 (+) Length   123 a.a.
NCBI ID   WP_000601105.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 sCas9revertant     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 187601..197972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF61_RS01120 (POF61_01120) - 188778..189143 (+) 366 WP_000285373.1 DUF1033 family protein -
  POF61_RS01125 (POF61_01125) comGA 189315..190286 (+) 972 WP_000250801.1 competence type IV pilus ATPase ComGA Machinery gene
  POF61_RS01130 (POF61_01130) comGB 190180..191223 (+) 1044 WP_228313184.1 competence type IV pilus assembly protein ComGB Machinery gene
  POF61_RS01135 (POF61_01135) comGC/cglC 191220..191549 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  POF61_RS01140 (POF61_01140) comGD 191524..191937 (+) 414 WP_000244259.1 competence type IV pilus minor pilin ComGD Machinery gene
  POF61_RS01145 (POF61_01145) comGE 191909..192208 (+) 300 WP_038406052.1 competence type IV pilus minor pilin ComGE Machinery gene
  POF61_RS01150 (POF61_01150) comGF 192162..192623 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  POF61_RS01155 (POF61_01155) comGG 192601..192972 (+) 372 WP_000601105.1 competence type IV pilus minor pilin ComGG Machinery gene
  POF61_RS01160 (POF61_01160) comGH 193087..194061 (+) 975 WP_001008567.1 class I SAM-dependent methyltransferase Machinery gene
  POF61_RS01165 (POF61_01165) - 194093..195286 (+) 1194 WP_000047534.1 acetate kinase -
  POF61_RS01170 (POF61_01170) - 195414..195606 (+) 193 Protein_174 helix-turn-helix transcriptional regulator -
  POF61_RS01175 (POF61_01175) - 195585..195851 (+) 267 Protein_175 hypothetical protein -
  POF61_RS01180 (POF61_01180) - 195920..196585 (+) 666 WP_000008107.1 type II CAAX endopeptidase family protein -
  POF61_RS01185 (POF61_01185) proC 196606..197376 (-) 771 WP_001876660.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13919.19 Da        Isoelectric Point: 10.0693

>NTDB_id=711322 POF61_RS01155 WP_000601105.1 192601..192972(+) (comGG) [Streptococcus agalactiae strain CNCTC 10/84 sCas9revertant]
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFTGGYVSYLQ
EGNYLQVKVTLDKGGNYNHKFYRKIDTLQVPLKSNDNKASHKH

Nucleotide


Download         Length: 372 bp        

>NTDB_id=711322 POF61_RS01155 WP_000601105.1 192601..192972(+) (comGG) [Streptococcus agalactiae strain CNCTC 10/84 sCas9revertant]
ATGATTTTAAAGAAGAAACTTAAAGCTGGCATCCTTTTGCAAGCTATTGTATTGGCTGCTGTATTTACACTCGTCTTACA
GTTTTATCTAGCAAGAATATTGGCAACAGAAAGACAGTATCATAGCCAAATTGAAGCAAGTAAAGCTTATTTAACAGCGC
AGTTAGCTTATAAAACAATAGAAGGCGACTCCATATCAGGAAAATGTTATTTTACAGGAGGATATGTTTCATACCTCCAA
GAAGGGAACTATTTACAAGTTAAGGTTACATTGGATAAGGGAGGAAACTATAACCATAAGTTTTATCGTAAAATAGACAC
TCTCCAAGTACCTCTCAAGTCTAATGATAATAAAGCAAGCCATAAACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.554

82.114

0.366
  comGG Streptococcus mutans UA159

44.554

82.114

0.366