Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   POF63_RS05140 Genome accession   NZ_CP116708
Coordinates   974646..975716 (-) Length   356 a.a.
NCBI ID   WP_000817925.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 sCas9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 969646..980716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF63_RS05120 (POF63_05120) - 970186..970938 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  POF63_RS05125 (POF63_05125) - 970940..972895 (+) 1956 WP_000499554.1 FtsX-like permease family protein -
  POF63_RS05130 (POF63_05130) braR 973005..973673 (+) 669 WP_000076878.1 response regulator transcription factor Regulator
  POF63_RS05135 (POF63_05135) - 973670..974608 (+) 939 WP_000620980.1 sensor histidine kinase -
  POF63_RS05140 (POF63_05140) xerS 974646..975716 (-) 1071 WP_000817925.1 tyrosine recombinase XerS Machinery gene
  POF63_RS05145 (POF63_05145) - 976175..977836 (+) 1662 WP_000093971.1 peptide ABC transporter substrate-binding protein -
  POF63_RS05150 (POF63_05150) - 977869..978642 (-) 774 WP_000622397.1 DUF3307 domain-containing protein -
  POF63_RS05155 (POF63_05155) - 978639..979319 (-) 681 WP_000280307.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41409.59 Da        Isoelectric Point: 9.3616

>NTDB_id=711258 POF63_RS05140 WP_000817925.1 974646..975716(-) (xerS) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKLSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=711258 POF63_RS05140 WP_000817925.1 974646..975716(-) (xerS) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTTTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCATATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAACTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATACCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGAGGGAAACGGGACTCT
GTCAATGTAGCTAGCTTTGCGAAACCCTATCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGACAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837