Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   NN994_RS02220 Genome accession   NZ_CP101646
Coordinates   398343..398786 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain UCCSt95     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 393343..403786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN994_RS02200 (NN994_02200) - 393856..394617 (-) 762 WP_064355432.1 NUDIX domain-containing protein -
  NN994_RS02205 (NN994_02205) - 394681..395787 (-) 1107 WP_024009756.1 AAA family ATPase -
  NN994_RS02210 (NN994_02210) gdhA 396131..397483 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  NN994_RS02215 (NN994_02215) - 397742..398152 (+) 411 WP_011680804.1 peptide deformylase -
  NN994_RS02220 (NN994_02220) rcrR 398343..398786 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  NN994_RS02225 (NN994_02225) rcrP 398790..400604 (+) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  NN994_RS02230 (NN994_02230) rcrQ 400594..402372 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  NN994_RS02235 (NN994_02235) - 402528..402899 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=711204 NN994_RS02220 WP_002945408.1 398343..398786(+) (rcrR) [Streptococcus thermophilus strain UCCSt95]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=711204 NN994_RS02220 WP_002945408.1 398343..398786(+) (rcrR) [Streptococcus thermophilus strain UCCSt95]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537