Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NON14_RS02320 Genome accession   NZ_CP101642
Coordinates   486961..487650 (-) Length   229 a.a.
NCBI ID   WP_056948148.1    Uniprot ID   A0AAX0VAL7
Organism   Latilactobacillus sakei strain HRB10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 481961..492650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS02310 (NON14_02305) rpoC 482567..486211 (+) 3645 WP_128522133.1 DNA-directed RNA polymerase subunit beta' -
  NON14_RS02315 (NON14_02310) - 486385..486957 (+) 573 WP_056948146.1 isochorismatase family protein -
  NON14_RS02320 (NON14_02315) comC 486961..487650 (-) 690 WP_056948148.1 A24 family peptidase Machinery gene
  NON14_RS02325 (NON14_02320) rpsL 487931..488344 (+) 414 WP_004270179.1 30S ribosomal protein S12 -
  NON14_RS02330 (NON14_02325) rpsG 488434..488904 (+) 471 WP_004270185.1 30S ribosomal protein S7 -
  NON14_RS02335 (NON14_02330) fusA 489000..491087 (+) 2088 WP_016265721.1 elongation factor G -
  NON14_RS02340 (NON14_02335) - 491658..492209 (-) 552 WP_076632257.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26176.47 Da        Isoelectric Point: 7.1616

>NTDB_id=711125 NON14_RS02320 WP_056948148.1 486961..487650(-) (comC) [Latilactobacillus sakei strain HRB10]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWYDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLAPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVIILLQTPQ

Nucleotide


Download         Length: 690 bp        

>NTDB_id=711125 NON14_RS02320 WP_056948148.1 486961..487650(-) (comC) [Latilactobacillus sakei strain HRB10]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACAGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGTATGATTTATTACCACTAT
TCAGCTACTTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGCGCCCCTCTTCTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGTTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGT
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTCGGCCTTGAATCCGTTTTGCGAATTCTCTTAGCAGCCTG
TTTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCTTTTATTC
CCTATATATCGATGGGAGTGGTGATAATACTCCTACAAACACCACAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(99-193)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

98.253

100

0.983