Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   TEMA_RS18080 Genome accession   NZ_CP101637
Coordinates   3619300..3620253 (+) Length   317 a.a.
NCBI ID   WP_228106202.1    Uniprot ID   -
Organism   Terrisporobacter mayombei strain DSM 6539     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3614300..3625253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TEMA_RS18060 (TEMA_37300) - 3614496..3615863 (+) 1368 WP_228106206.1 MATE family efflux transporter -
  TEMA_RS18065 (TEMA_37310) - 3615969..3617420 (+) 1452 WP_228106205.1 DEAD/DEAH box helicase -
  TEMA_RS18070 (TEMA_37320) - 3617555..3618442 (+) 888 WP_228106204.1 MerR family transcriptional regulator -
  TEMA_RS18075 (TEMA_37330) - 3618627..3619094 (+) 468 WP_228106203.1 metallophosphoesterase family protein -
  TEMA_RS18080 (TEMA_37340) ceuB 3619300..3620253 (+) 954 WP_228106202.1 ABC transporter permease Machinery gene
  TEMA_RS18085 (TEMA_37350) - 3620243..3621250 (+) 1008 WP_331476771.1 iron chelate uptake ABC transporter family permease subunit -
  TEMA_RS18090 (TEMA_37360) - 3621247..3622002 (+) 756 WP_228106201.1 ABC transporter ATP-binding protein -
  TEMA_RS18095 (TEMA_37370) - 3622091..3623044 (+) 954 WP_228106200.1 siderophore ABC transporter substrate-binding protein -
  TEMA_RS18100 (TEMA_37380) amrA 3623294..3624703 (+) 1410 WP_228106199.1 AmmeMemoRadiSam system protein A -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34733.91 Da        Isoelectric Point: 9.5376

>NTDB_id=711088 TEMA_RS18080 WP_228106202.1 3619300..3620253(+) (ceuB) [Terrisporobacter mayombei strain DSM 6539]
MKKRYLIIMLIGLSLVSIFLGAKNINIMNILSRDREAIHLMVVSRLPRLISILMAGSAMSICGLIMQQISQNKFVSPTTG
ATIDSAQLGIVIAMVLIPGATTMQKAMVSFVFALGGTFIFMTFLRNLKVKSVIFVPLVGIMFGNIIGSITTYIGYEFEIM
QNVGSWMQGNFSMILKGNYELLYLAIPLMILAFVFAHKFTVAGMGEDFATNLGLDYKKIVNLGLVIVSIVTVCVVITAGE
IPYIGLIVPNIVSLYKGDNVHENIWDTALFGAIFVLVCDIAARVIIYPYELSVGLTVGVIGSVIFLYLILRRKSYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=711088 TEMA_RS18080 WP_228106202.1 3619300..3620253(+) (ceuB) [Terrisporobacter mayombei strain DSM 6539]
ATGAAAAAAAGATATTTAATCATAATGTTAATTGGATTATCTTTAGTTTCTATATTTTTAGGAGCTAAAAATATAAATAT
AATGAATATTTTAAGTAGAGATCGAGAGGCTATACATCTTATGGTGGTAAGTAGACTCCCAAGATTAATAAGTATATTAA
TGGCAGGAAGTGCTATGAGTATATGTGGGTTAATAATGCAACAAATAAGTCAGAATAAATTTGTTTCTCCAACAACAGGA
GCGACAATAGACTCTGCTCAGTTAGGTATAGTTATAGCTATGGTACTTATTCCAGGAGCGACAACAATGCAAAAAGCTAT
GGTATCTTTTGTATTTGCTTTGGGGGGAACATTCATATTCATGACATTTTTAAGAAATTTAAAAGTTAAAAGTGTAATAT
TTGTACCATTAGTTGGCATAATGTTTGGAAATATAATAGGATCAATAACGACTTACATAGGATATGAATTTGAAATAATG
CAAAATGTTGGTTCTTGGATGCAAGGTAATTTCTCCATGATTTTAAAGGGAAATTATGAATTATTATATTTAGCCATACC
ACTTATGATTTTAGCATTTGTATTTGCTCATAAATTTACAGTGGCAGGTATGGGAGAAGACTTTGCAACGAACTTAGGTC
TTGATTACAAAAAAATAGTTAATCTTGGCCTTGTAATAGTTTCAATAGTCACAGTATGTGTAGTAATAACAGCAGGAGAA
ATTCCTTATATAGGATTAATCGTTCCTAATATAGTTTCTTTATATAAAGGTGATAATGTTCATGAAAATATATGGGATAC
AGCCTTATTTGGAGCAATATTTGTTTTAGTTTGTGACATAGCAGCTAGAGTAATAATTTATCCATATGAACTTTCTGTTG
GACTTACAGTTGGAGTTATAGGAAGTGTCATATTCCTTTATTTAATATTAAGGAGGAAGTCATATGCAAGCTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.84

98.738

0.492