Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   TEMA_RS03475 Genome accession   NZ_CP101637
Coordinates   672148..673911 (+) Length   587 a.a.
NCBI ID   WP_228104678.1    Uniprot ID   -
Organism   Terrisporobacter mayombei strain DSM 6539     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 667148..678911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TEMA_RS03460 (TEMA_07420) - 668487..669551 (-) 1065 WP_228104675.1 sensor histidine kinase -
  TEMA_RS03465 (TEMA_07430) - 669541..670218 (-) 678 WP_228104676.1 response regulator transcription factor -
  TEMA_RS03470 (TEMA_07440) rcrP 670386..672155 (+) 1770 WP_228104677.1 ABC transporter ATP-binding protein Regulator
  TEMA_RS03475 (TEMA_07450) rcrQ 672148..673911 (+) 1764 WP_228104678.1 ABC transporter ATP-binding protein Regulator
  TEMA_RS03480 (TEMA_07460) - 674113..675081 (+) 969 WP_228104679.1 alpha/beta hydrolase -
  TEMA_RS03485 (TEMA_07470) - 675235..676545 (+) 1311 WP_228104680.1 protein kinase domain-containing protein -
  TEMA_RS03490 (TEMA_07480) - 676725..677222 (+) 498 WP_228104681.1 GNAT family N-acetyltransferase -
  TEMA_RS03495 (TEMA_07490) - 677378..678610 (+) 1233 WP_228104682.1 VanW family protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64666.86 Da        Isoelectric Point: 5.7621

>NTDB_id=711074 TEMA_RS03475 WP_228104678.1 672148..673911(+) (rcrQ) [Terrisporobacter mayombei strain DSM 6539]
MLNKNKSKSEGRLGNLLVYMKKYSFALVVAFIFAIGGSVITVISPDKLSEVTDLITQGIVTGINIEKISSICLLLAGLYG
LSIILSYLQGFIMATVTQKTTKELRSDISNKINKLPLKYFDKTTVGDVLSRMTNDVDTIGQTLNQSVGTLVSGISLLLGS
LYMMTTTNVTMTITAVVATVIGFGLMMLIISKSQKYFINQQRYLGEINGHIEEAYTGHSVIKVYNAGEETNKEFKTLNDS
LRQSAWKSQFISGLMMPLMSFIGNFGYVAVCVVGAVLAFNDKISFGVIVAFMMYIRFFTQPLAQFAQAATSLQSTSAACK
RVFEFLEEEEMEEESNKDISLENVKGHVKFENVKFGYDEDKLIIKNFSADIKPGQKVAIVGPTGAGKTTLVNLLMKFYDV
NSGTIKIDGVPIQTLSREKVHDLFCMVLQDTWLFEGTIRENISYNKGDASESVIISACKAVGIDHFIRTLPEGYDTILDD
NTNLSAGQKQLITIARAMVKNAPLLILDEATSSVDTRTELLIQEAMDKLTVGKTSFVIAHRLSTIKNADVILVMKDGDII
ESGNHEELLSVNGFYAELYNSQFEKAS

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=711074 TEMA_RS03475 WP_228104678.1 672148..673911(+) (rcrQ) [Terrisporobacter mayombei strain DSM 6539]
ATGCTTAATAAAAATAAATCAAAATCAGAAGGTAGATTAGGCAATTTATTAGTATATATGAAAAAATATAGTTTTGCCTT
AGTTGTAGCCTTTATATTTGCCATAGGTGGATCAGTAATAACAGTTATAAGTCCAGATAAATTAAGTGAAGTTACAGATT
TAATTACACAAGGAATAGTAACTGGAATTAATATTGAAAAGATATCAAGTATATGTTTACTTTTAGCAGGATTATATGGT
CTTAGTATTATATTATCTTATTTACAAGGTTTTATAATGGCAACAGTAACGCAAAAAACTACTAAAGAGTTAAGAAGTGA
TATATCTAATAAAATAAATAAATTACCATTAAAATATTTTGATAAAACGACTGTTGGTGATGTACTAAGCCGTATGACTA
ATGACGTAGATACAATAGGTCAAACTTTAAATCAAAGTGTTGGTACTTTAGTAAGTGGTATATCTTTATTATTAGGTTCT
TTGTATATGATGACAACTACAAACGTCACTATGACAATCACAGCAGTAGTAGCTACGGTGATTGGTTTTGGGTTAATGAT
GTTAATAATATCAAAATCTCAAAAATATTTTATAAATCAACAACGCTATCTTGGAGAAATAAATGGACATATAGAAGAAG
CTTATACAGGTCATAGTGTAATTAAAGTATATAATGCAGGGGAAGAAACAAATAAAGAATTTAAAACATTAAATGATAGT
CTTCGTCAAAGTGCATGGAAATCACAATTTATATCAGGTTTAATGATGCCTTTAATGTCATTTATAGGTAACTTTGGATA
TGTGGCAGTTTGTGTTGTAGGTGCAGTACTTGCTTTCAATGATAAGATAAGTTTTGGTGTAATAGTAGCATTTATGATGT
ATATTAGATTCTTTACACAACCCCTTGCTCAATTTGCTCAAGCAGCTACTTCTCTGCAATCAACATCAGCTGCATGTAAA
CGTGTATTTGAGTTTTTAGAAGAAGAGGAAATGGAAGAGGAAAGCAATAAAGATATTTCTTTAGAAAATGTAAAAGGTCA
TGTTAAATTTGAAAATGTTAAATTTGGATATGATGAAGATAAATTAATAATAAAAAATTTCTCTGCTGATATAAAACCAG
GTCAAAAAGTTGCCATAGTAGGACCAACTGGGGCTGGTAAAACTACTTTAGTAAACTTACTAATGAAGTTCTACGATGTA
AATAGTGGAACAATAAAAATAGATGGGGTCCCAATACAAACTTTAAGTAGAGAAAAAGTACATGATTTATTCTGTATGGT
ACTTCAAGATACATGGTTGTTTGAAGGAACAATTAGAGAAAATATATCTTACAATAAAGGTGATGCGTCAGAATCAGTTA
TAATATCTGCTTGTAAAGCTGTTGGAATAGATCATTTTATAAGAACTTTACCTGAAGGGTACGATACAATATTAGACGAT
AATACTAATTTATCGGCTGGGCAAAAACAGTTAATTACTATAGCGAGAGCAATGGTGAAAAATGCACCTCTATTAATACT
AGATGAGGCAACAAGTTCTGTAGATACTCGTACAGAATTGTTAATTCAAGAGGCTATGGACAAATTAACAGTAGGAAAAA
CTTCATTTGTTATAGCTCATAGATTATCAACTATAAAAAATGCTGATGTAATTTTAGTTATGAAAGATGGAGATATTATA
GAGAGTGGAAATCATGAAGAACTTTTAAGTGTAAATGGATTCTATGCAGAACTTTATAATAGTCAATTTGAAAAAGCCAG
TTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(28-302)

ABC transporter (ABC_tran)

(365-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.931

98.807

0.572