Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   TEMA_RS03470 Genome accession   NZ_CP101637
Coordinates   670386..672155 (+) Length   589 a.a.
NCBI ID   WP_228104677.1    Uniprot ID   -
Organism   Terrisporobacter mayombei strain DSM 6539     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 665386..677155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TEMA_RS03450 (TEMA_07400) - 666338..666925 (+) 588 WP_228104673.1 hypothetical protein -
  TEMA_RS03455 (TEMA_07410) - 667046..668440 (+) 1395 WP_228104674.1 protein kinase domain-containing protein -
  TEMA_RS03460 (TEMA_07420) - 668487..669551 (-) 1065 WP_228104675.1 sensor histidine kinase -
  TEMA_RS03465 (TEMA_07430) - 669541..670218 (-) 678 WP_228104676.1 response regulator transcription factor -
  TEMA_RS03470 (TEMA_07440) rcrP 670386..672155 (+) 1770 WP_228104677.1 ABC transporter ATP-binding protein Regulator
  TEMA_RS03475 (TEMA_07450) rcrQ 672148..673911 (+) 1764 WP_228104678.1 ABC transporter ATP-binding protein Regulator
  TEMA_RS03480 (TEMA_07460) - 674113..675081 (+) 969 WP_228104679.1 alpha/beta hydrolase -
  TEMA_RS03485 (TEMA_07470) - 675235..676545 (+) 1311 WP_228104680.1 protein kinase domain-containing protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65757.71 Da        Isoelectric Point: 9.1068

>NTDB_id=711073 TEMA_RS03470 WP_228104677.1 670386..672155(+) (rcrP) [Terrisporobacter mayombei strain DSM 6539]
MLKILKYLTKKDWLFVLCSFVFVVAQVYLDLKLPDYMSEITRLVQTPNSEMSEILSAGGYMLLCAFGSLIAAFIVGYFAA
KIASNLSWKLRSSVYDKIEGFSMAEINKFSTASLITRSTNDITQIQNIVAMGLQLIIKAPITAVWAVCKILGKGWQWSAA
TGGAILVLVLIILVIMVFALPRFKKIQKLTDRLNLVTRENLTGIRVVRAYNAENYQNSKFENVNEEITKNNLVINRVMAI
MQPGMMFVMNGLTLAIYWIGAYLINDADIMDKMNLFSDMIVFSSYSMQVIMAFMMLTMIFIMMPRASVSAKRILEVLNTK
GSIVDGDGEFEKASKTGEIEFKNVSFKYPDSEGSDYVLRDISFTAKKGETVAIIGSTGSGKTSLINLIPRFYDVTEGEVL
VNGVNVKKYKQKQLNNLLGYVHQKAVLFSGDITSNVAYGDNGRENYSELDVKRAVKIAQGTEFVEKMENTYKASISQGGS
NVSGGQKQRLSIARAICRKPEIYIFDDSFSALDYKTDRKLRSVLKHEISDATNLIVAQRIGTIIDADKIIVLDEGQIAGM
GTHDELMKKCRVYQEIAYSQLSKEELANA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=711073 TEMA_RS03470 WP_228104677.1 670386..672155(+) (rcrP) [Terrisporobacter mayombei strain DSM 6539]
ATGTTAAAGATATTAAAATATTTAACAAAAAAAGACTGGTTGTTTGTACTTTGTAGCTTTGTATTTGTAGTAGCACAAGT
ATATCTTGATTTAAAACTTCCAGATTATATGTCTGAAATTACAAGGTTAGTTCAGACACCAAATAGTGAAATGAGTGAAA
TATTAAGTGCTGGTGGATATATGCTACTATGCGCCTTTGGTAGTTTAATAGCTGCCTTTATTGTAGGTTACTTTGCAGCT
AAAATAGCTTCAAACTTATCATGGAAACTTCGTTCAAGTGTATACGATAAAATAGAAGGCTTCTCAATGGCTGAAATAAA
TAAATTTTCTACAGCTAGTTTAATAACACGTTCGACTAATGATATAACTCAAATTCAAAATATTGTAGCTATGGGGCTTC
AATTAATAATAAAGGCTCCAATTACAGCAGTATGGGCAGTTTGCAAGATTCTAGGAAAAGGATGGCAATGGAGTGCTGCC
ACTGGTGGAGCCATATTAGTTTTAGTATTAATCATATTAGTAATAATGGTATTTGCTTTACCTAGATTTAAAAAGATTCA
AAAATTAACTGACAGACTTAACTTAGTAACAAGGGAAAATTTAACGGGAATACGTGTAGTTCGTGCATACAATGCAGAAA
ACTATCAAAATAGTAAATTTGAAAATGTTAATGAAGAGATAACTAAAAATAACTTAGTAATAAATAGAGTTATGGCAATA
ATGCAACCAGGAATGATGTTTGTAATGAATGGATTGACACTTGCTATATACTGGATAGGTGCTTATCTAATAAATGATGC
AGATATCATGGATAAAATGAACTTATTTAGTGACATGATAGTCTTCTCATCTTATTCAATGCAGGTAATAATGGCATTTA
TGATGTTAACAATGATATTTATAATGATGCCAAGAGCTTCAGTTTCAGCTAAACGTATACTTGAAGTATTAAATACAAAG
GGAAGTATAGTTGATGGAGATGGAGAATTTGAAAAGGCCTCAAAAACTGGTGAAATAGAATTCAAAAATGTTAGCTTTAA
ATATCCCGACTCAGAAGGTTCAGACTATGTACTTCGTGATATAAGCTTTACAGCTAAAAAGGGTGAAACTGTTGCCATAA
TTGGATCTACAGGAAGTGGCAAAACTTCTTTAATTAACTTAATACCAAGGTTTTATGATGTTACAGAAGGTGAAGTATTA
GTAAATGGAGTTAATGTAAAAAAATATAAACAAAAGCAACTAAATAATCTTTTAGGATATGTTCATCAAAAGGCCGTGCT
ATTTTCTGGAGATATAACTTCAAACGTAGCTTATGGTGATAATGGTAGAGAAAATTACTCGGAGCTAGATGTGAAAAGAG
CTGTGAAAATAGCTCAAGGTACTGAGTTTGTTGAAAAAATGGAGAATACTTATAAAGCAAGCATTTCTCAAGGAGGAAGT
AACGTATCAGGAGGACAAAAACAAAGATTATCCATAGCAAGGGCAATATGTAGAAAGCCAGAAATATATATATTTGATGA
TTCATTTTCAGCACTTGACTATAAAACTGATAGAAAACTTAGATCTGTATTAAAACATGAAATATCAGATGCTACAAATT
TAATAGTAGCACAACGTATAGGTACTATAATTGATGCAGATAAAATAATAGTTCTTGATGAAGGACAAATAGCAGGTATG
GGAACTCATGATGAACTTATGAAAAAATGTAGGGTCTATCAAGAAATAGCATATTCTCAGCTTTCAAAGGAGGAATTAGC
CAATGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(358-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.741

100

0.53