Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NN913_RS14975 Genome accession   NZ_CP101621
Coordinates   3027194..3027838 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain 906     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022194..3032838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN913_RS14940 (NN913_14900) - 3023379..3023810 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  NN913_RS14945 (NN913_14905) - 3023810..3024151 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  NN913_RS14950 (NN913_14910) - 3024144..3025625 (+) 1482 WP_255763954.1 Na+/H+ antiporter subunit D -
  NN913_RS14955 (NN913_14915) - 3025631..3026107 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  NN913_RS14960 (NN913_14920) - 3026107..3026391 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  NN913_RS14965 (NN913_14925) mnhG 3026375..3026749 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  NN913_RS14970 (NN913_14930) - 3026789..3027172 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  NN913_RS14975 (NN913_14935) comA 3027194..3027838 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  NN913_RS14980 (NN913_14940) comP 3027919..3030219 (-) 2301 WP_236837055.1 histidine kinase Regulator
  NN913_RS14985 (NN913_14945) comX 3030233..3030406 (-) 174 WP_012118314.1 competence pheromone ComX -
  NN913_RS14990 (NN913_14950) - 3030375..3031235 (-) 861 WP_159073777.1 polyprenyl synthetase family protein -
  NN913_RS14995 (NN913_14955) degQ 3031443..3031583 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  NN913_RS15000 (NN913_14960) - 3032049..3032390 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=711038 NN913_RS14975 WP_003152052.1 3027194..3027838(-) (comA) [Bacillus velezensis strain 906]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=711038 NN913_RS14975 WP_003152052.1 3027194..3027838(-) (comA) [Bacillus velezensis strain 906]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGGACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864