Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NN913_RS08045 Genome accession   NZ_CP101621
Coordinates   1585266..1586165 (+) Length   299 a.a.
NCBI ID   WP_003154279.1    Uniprot ID   -
Organism   Bacillus velezensis strain 906     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1580266..1591165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN913_RS08025 (NN913_08020) - 1580957..1582660 (+) 1704 WP_255764288.1 glycosyl transferase -
  NN913_RS08030 (NN913_08025) - 1582657..1582938 (+) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  NN913_RS08035 (NN913_08030) sucC 1583113..1584270 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  NN913_RS08040 (NN913_08035) sucD 1584299..1585201 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  NN913_RS08045 (NN913_08040) dprA 1585266..1586165 (+) 900 WP_003154279.1 DNA-processing protein DprA Machinery gene
  NN913_RS08050 (NN913_08045) topA 1586347..1588422 (+) 2076 WP_072588510.1 type I DNA topoisomerase -
  NN913_RS08055 (NN913_08050) trmFO 1588487..1589794 (+) 1308 WP_255764289.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NN913_RS08060 (NN913_08055) xerC 1589864..1590781 (+) 918 WP_043867088.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32844.89 Da        Isoelectric Point: 7.8285

>NTDB_id=711011 NN913_RS08045 WP_003154279.1 1585266..1586165(+) (dprA) [Bacillus velezensis strain 906]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFFSDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=711011 NN913_RS08045 WP_003154279.1 1585266..1586165(+) (dprA) [Bacillus velezensis strain 906]
TTGGATCAAGCATCGCGGTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTTTCGGATCCGCATCCATTAACTGTTTTATCAGAGGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTTATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
ACCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

40.502

93.311

0.378