Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NN913_RS07195 Genome accession   NZ_CP101621
Coordinates   1371387..1371671 (+) Length   94 a.a.
NCBI ID   WP_070081755.1    Uniprot ID   -
Organism   Bacillus velezensis strain 906     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1366387..1376671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN913_RS07175 (NN913_07170) - 1367634..1368542 (+) 909 WP_102421869.1 ketopantoate reductase family protein -
  NN913_RS07180 (NN913_07175) - 1368572..1369804 (-) 1233 WP_043867057.1 aminopeptidase -
  NN913_RS07185 (NN913_07180) - 1369905..1370039 (-) 135 WP_003154559.1 protein YkpC -
  NN913_RS07190 (NN913_07185) mreBH 1370111..1371118 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  NN913_RS07195 (NN913_07190) abrB 1371387..1371671 (+) 285 WP_070081755.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NN913_RS07200 (NN913_07195) - 1371844..1373148 (+) 1305 WP_014304932.1 ATP-binding protein -
  NN913_RS07205 (NN913_07200) - 1373150..1373977 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  NN913_RS07210 (NN913_07205) ktrC 1374018..1374683 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  NN913_RS07215 (NN913_07210) ade 1374832..1376565 (+) 1734 WP_003154552.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10573.47 Da        Isoelectric Point: 6.9830

>NTDB_id=711010 NN913_RS07195 WP_070081755.1 1371387..1371671(+) (abrB) [Bacillus velezensis strain 906]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIKEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=711010 NN913_RS07195 WP_070081755.1 1371387..1371671(+) (abrB) [Bacillus velezensis strain 906]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCAAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543