Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   K6J64_RS01840 Genome accession   NZ_AP018775
Coordinates   365208..365504 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain CHBN-III-4 isolate 12H35     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 360208..370504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J64_RS09075 - 361739..361870 (+) 132 Protein_358 PT domain-containing protein -
  K6J64_RS01830 (CHBNIII4_03540) - 361806..364763 (+) 2958 WP_221260092.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K6J64_RS01835 (CHBNIII4_03550) - 365033..365215 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  K6J64_RS01840 (CHBNIII4_03560) HI0659 365208..365504 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  K6J64_RS01845 (CHBNIII4_03570) - 365688..367604 (+) 1917 WP_048946754.1 ABC transporter ATP-binding protein -
  K6J64_RS01850 (CHBNIII4_03580) - 367614..368150 (+) 537 WP_042594704.1 type I DNA topoisomerase -
  K6J64_RS01855 (CHBNIII4_03590) - 368166..368717 (+) 552 WP_048946753.1 Sua5/YciO/YrdC/YwlC family protein -
  K6J64_RS01860 (CHBNIII4_03600) aroE 368721..369539 (+) 819 WP_048946752.1 shikimate dehydrogenase -
  K6J64_RS01865 (CHBNIII4_03610) - 369536..370093 (+) 558 WP_048946751.1 DNA-3-methyladenine glycosylase I -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=71097 K6J64_RS01840 WP_005650837.1 365208..365504(+) (HI0659) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=71097 K6J64_RS01840 WP_005650837.1 365208..365504(+) (HI0659) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGAGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment