Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   POF60_RS06605 Genome accession   NZ_CP116705
Coordinates   1273900..1274340 (-) Length   146 a.a.
NCBI ID   WP_000431166.1    Uniprot ID   Q8DYZ0
Organism   Streptococcus agalactiae strain CNCTC 10/84 dCas9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268900..1279340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF60_RS06590 (POF60_06590) - 1269100..1269726 (-) 627 WP_000449640.1 GTP pyrophosphokinase -
  POF60_RS06595 (POF60_06595) - 1269875..1270081 (-) 207 WP_001876841.1 hypothetical protein -
  POF60_RS06600 (POF60_06600) - 1270733..1273141 (-) 2409 WP_000489013.1 YSIRK signal domain/LPXTG anchor domain surface protein -
  POF60_RS06605 (POF60_06605) rcrR 1273900..1274340 (-) 441 WP_000431166.1 MarR family transcriptional regulator Regulator
  POF60_RS06610 (POF60_06610) - 1274616..1276688 (+) 2073 WP_000726915.1 bifunctional metallophosphatase/5'-nucleotidase -
  POF60_RS06615 (POF60_06615) - 1276725..1277135 (-) 411 WP_000594940.1 peptide deformylase -
  POF60_RS06620 (POF60_06620) gdhA 1277205..1278554 (-) 1350 WP_000200439.1 NADP-specific glutamate dehydrogenase -
  POF60_RS06625 (POF60_06625) - 1278722..1279231 (+) 510 WP_000870956.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16924.92 Da        Isoelectric Point: 10.0162

>NTDB_id=710946 POF60_RS06605 WP_000431166.1 1273900..1274340(-) (rcrR) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
MENPLQKARILVNQLEKYLDHYAKEYDVEHLAGPQGHLVMYLYKHPDKDMSIKAVEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKKKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMENLD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=710946 POF60_RS06605 WP_000431166.1 1273900..1274340(-) (rcrR) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCATTATGCAAAAGAATATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACCTAGTGATGTATCTCTATAAACATCCTGATAAGGATATGTCTATAAAAG
CTGTTGAAGAAATCTTACACATTTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGTTTTATTGCG
ATTGTACCATCTAAGACAGATAAGCGTGTAAAATATCTTTATTTGACTCACTTAGGTAAAAAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCATAGTACTATGTTAGCAGGTATTACTAAAGAAGAGATTCGTACCACCAAAAAGGTTATTA
GGACATTAGCTAAAAATATGGCAATGGAAAATCTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DYZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.143

95.89

0.404