Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   POF60_RS06300 Genome accession   NZ_CP116705
Coordinates   1205805..1206287 (-) Length   160 a.a.
NCBI ID   WP_000163512.1    Uniprot ID   Q8DZB3
Organism   Streptococcus agalactiae strain CNCTC 10/84 dCas9     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1200805..1211287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF60_RS06280 (POF60_06280) alsS 1201064..1202746 (-) 1683 WP_000140344.1 acetolactate synthase AlsS -
  POF60_RS06285 (POF60_06285) - 1202856..1204082 (-) 1227 WP_000934874.1 hypothetical protein -
  POF60_RS06290 (POF60_06290) - 1204072..1205262 (-) 1191 WP_001081537.1 AI-2E family transporter -
  POF60_RS06295 (POF60_06295) - 1205354..1205815 (-) 462 WP_000796049.1 NUDIX hydrolase -
  POF60_RS06300 (POF60_06300) mutX 1205805..1206287 (-) 483 WP_000163512.1 8-oxo-dGTP diphosphatase Machinery gene
  POF60_RS06305 (POF60_06305) hylB 1206505..1209724 (+) 3220 Protein_1163 hyaluronate lyase -
  POF60_RS06310 (POF60_06310) rfbB 1209776..1210822 (-) 1047 WP_000134279.1 dTDP-glucose 4,6-dehydratase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18837.23 Da        Isoelectric Point: 4.5116

>NTDB_id=710941 POF60_RS06300 WP_000163512.1 1205805..1206287(-) (mutX) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
MTKLATICYIDNGKELLLLHRNKKENDVHEGKWISVGGKLEAGETPDECAKREILEETHLTVKKMDFKGVITFPEFTPGH
DWYTYVFKVTDYEGELISDDESREGTLEWVPYDQVLSKPTWQGDYEIFKWILEDVPFFSAKFVYDEHQNLIEKTVNFYEK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=710941 POF60_RS06300 WP_000163512.1 1205805..1206287(-) (mutX) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
ATGACTAAATTAGCAACAATTTGTTACATTGACAATGGCAAGGAATTACTTCTATTGCACCGCAACAAAAAAGAGAATGA
TGTTCATGAGGGAAAGTGGATCTCGGTAGGTGGTAAACTGGAGGCAGGTGAAACTCCTGATGAATGTGCTAAGCGTGAAA
TTCTAGAAGAAACCCATTTAACGGTAAAAAAAATGGATTTTAAAGGAGTCATCACTTTTCCTGAATTTACGCCAGGTCAT
GATTGGTATACCTATGTCTTTAAAGTAACAGATTATGAAGGAGAGTTAATTTCAGATGATGAATCACGAGAAGGAACTTT
AGAATGGGTACCATATGATCAAGTTCTTTCTAAGCCAACGTGGCAAGGAGATTACGAAATTTTTAAATGGATTTTAGAAG
ATGTTCCTTTCTTTTCTGCTAAGTTTGTTTATGATGAACACCAAAATTTAATTGAAAAGACGGTTAATTTTTATGAAAAA
TAG

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.698

99.375

0.712