Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   POF60_RS05135 Genome accession   NZ_CP116705
Coordinates   972579..973247 (+) Length   222 a.a.
NCBI ID   WP_000076878.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 dCas9     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 967579..978247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF60_RS05115 (POF60_05115) - 968118..968606 (-) 489 WP_001140791.1 PASTA domain-containing protein -
  POF60_RS05120 (POF60_05120) - 968772..969734 (+) 963 WP_001253129.1 S41 family peptidase -
  POF60_RS05125 (POF60_05125) - 969760..970512 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  POF60_RS05130 (POF60_05130) - 970514..972469 (+) 1956 WP_000499554.1 FtsX-like permease family protein -
  POF60_RS05135 (POF60_05135) braR 972579..973247 (+) 669 WP_000076878.1 response regulator transcription factor Regulator
  POF60_RS05140 (POF60_05140) - 973244..974182 (+) 939 WP_000620980.1 sensor histidine kinase -
  POF60_RS05145 (POF60_05145) xerS 974220..975290 (-) 1071 WP_000817925.1 tyrosine recombinase XerS Machinery gene
  POF60_RS05150 (POF60_05150) - 975749..977410 (+) 1662 WP_000093971.1 peptide ABC transporter substrate-binding protein -
  POF60_RS05155 (POF60_05155) - 977443..978216 (-) 774 WP_000622397.1 DUF3307 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25431.47 Da        Isoelectric Point: 5.0693

>NTDB_id=710932 POF60_RS05135 WP_000076878.1 972579..973247(+) (braR) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
MSQEQGRIYIVEDDMTIVSLLKDHLSASYHVSSVSNFRDVKQEIIAFQPDLILMDITLPYFNGFYWTAELRKFLTIPIIF
ISSSNDEMDMVMALNMGGDDFISKPFSLAVLDAKLTAILRRSQQFIQQELTFGGFTLTREGLLSSQDKEVILSPTENKIL
SILLMHPKQVVSKESLLEKLWENDSFIDQNTLNVNMTRLRKKIVPIGFDYIHTVRGVGYLLQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=710932 POF60_RS05135 WP_000076878.1 972579..973247(+) (braR) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
ATGTCACAAGAGCAAGGAAGAATTTATATTGTAGAAGATGATATGACGATTGTGTCACTTTTAAAAGATCATTTATCAGC
TAGCTATCATGTCTCTAGTGTCAGCAATTTTCGTGATGTGAAACAAGAAATTATCGCATTTCAACCCGATTTGATACTAA
TGGATATTACGTTACCCTATTTTAATGGTTTTTACTGGACTGCAGAATTGCGTAAGTTTTTAACAATTCCTATTATTTTC
ATTTCATCTAGTAATGATGAAATGGATATGGTTATGGCATTAAATATGGGGGGTGATGACTTTATTTCAAAACCATTCTC
TCTAGCTGTATTAGATGCTAAGCTAACTGCTATTTTAAGGAGAAGTCAACAATTTATCCAACAGGAATTAACTTTTGGGG
GATTTACGTTGACAAGAGAAGGGTTATTGTCTAGCCAAGATAAAGAGGTTATTTTATCGCCAACAGAAAATAAAATCCTA
TCTATCTTGCTCATGCATCCTAAACAAGTAGTCTCAAAAGAGTCTCTATTAGAGAAACTTTGGGAAAATGATAGTTTTAT
TGATCAAAATACACTTAATGTTAATATGACACGCTTACGTAAAAAAATTGTCCCAATAGGTTTTGATTACATTCATACAG
TGAGAGGAGTTGGGTATTTACTACAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.789

98.198

0.459