Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NOF56_RS14310 Genome accession   NZ_CP101615
Coordinates   2955993..2956622 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DC71     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2950993..2961622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOF56_RS14295 (NOF56_14295) helD 2951235..2953289 (-) 2055 WP_000420536.1 DNA helicase IV -
  NOF56_RS14300 (NOF56_14300) yccF 2953412..2953858 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NOF56_RS14305 (NOF56_14305) yccS 2953868..2956030 (+) 2163 WP_000875023.1 YccS family putative transporter -
  NOF56_RS14310 (NOF56_14310) sxy/tfoX 2955993..2956622 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NOF56_RS14315 (NOF56_14315) sulA 2956841..2957350 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NOF56_RS14320 (NOF56_14320) ompA 2957707..2958759 (+) 1053 WP_001361736.1 porin OmpA -
  NOF56_RS14325 (NOF56_14325) matP 2958835..2959287 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NOF56_RS14330 (NOF56_14330) ycbZ 2959473..2961233 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=710931 NOF56_RS14310 WP_000839153.1 2955993..2956622(-) (sxy/tfoX) [Escherichia coli strain DC71]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=710931 NOF56_RS14310 WP_000839153.1 2955993..2956622(-) (sxy/tfoX) [Escherichia coli strain DC71]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1