Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NNG64_RS13390 Genome accession   NZ_CP101610
Coordinates   2718227..2718979 (-) Length   250 a.a.
NCBI ID   WP_060964642.1    Uniprot ID   A0AAI8HM51
Organism   Bacillus siamensis strain WYJ-E14     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2713227..2723979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS13360 (NNG64_13330) - 2713574..2714008 (+) 435 WP_017418279.1 helix-turn-helix domain-containing protein -
  NNG64_RS13365 (NNG64_13335) - 2714022..2714471 (+) 450 WP_256076081.1 ImmA/IrrE family metallo-endopeptidase -
  NNG64_RS13370 (NNG64_13340) - 2714510..2715934 (+) 1425 WP_017418281.1 recombinase family protein -
  NNG64_RS13375 (NNG64_13345) radC 2715947..2716354 (-) 408 Protein_2594 DNA repair protein RadC -
  NNG64_RS13380 (NNG64_13350) - 2716386..2716955 (-) 570 WP_060964644.1 nucleoside triphosphate pyrophosphatase -
  NNG64_RS13385 (NNG64_13355) - 2717099..2718100 (-) 1002 WP_060964643.1 SPOR domain-containing protein -
  NNG64_RS13390 (NNG64_13360) comC 2718227..2718979 (-) 753 WP_060964642.1 A24 family peptidase Machinery gene
  NNG64_RS13395 (NNG64_13365) - 2719119..2720411 (-) 1293 WP_060964641.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NNG64_RS13400 (NNG64_13370) - 2720470..2723112 (-) 2643 WP_060964640.1 valine--tRNA ligase -
  NNG64_RS13405 (NNG64_13375) - 2723564..2723755 (+) 192 WP_045926471.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26875.43 Da        Isoelectric Point: 8.8953

>NTDB_id=710877 NNG64_RS13390 WP_060964642.1 2718227..2718979(-) (comC) [Bacillus siamensis strain WYJ-E14]
MLFILFVLGLIFGSFFYTVACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYILQRGRCRHCREKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLIALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRIFSPLGSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYFYGEELFA
FYITLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=710877 NNG64_RS13390 WP_060964642.1 2718227..2718979(-) (comC) [Bacillus siamensis strain WYJ-E14]
GTGCTTTTCATTCTGTTTGTTCTCGGTCTGATTTTCGGTTCTTTTTTTTATACAGTCGCATGCCGTATTCCGCTTCGAAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCGTTCTGCGGCTTGCCGCTCTCTTGGGGGGAGCTTGTGCCCGTTGTTTCCT
ATATCTTGCAAAGAGGGAGATGCAGACACTGCCGTGAGAAGCTGTCAGTGATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTGTTCACGGCTGCCGGTATCCATTTCGGTTTCTCAAAAGAGCTGCTAATCGCGCTGTTATTTTTGTCCCTGCTGAT
GATTGTGACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATTTTTTCTCCGCTGGGTTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAGCTGTTTGGAGTGATCGGACTTGCGCTCGGCGTGAAGCT
TGTCCTTATTGCATTCTTTCTTTCCGTTATAATCGGAGCCGTATACGGTATGTGCGCCGCAGCGGGAGGCAGGCTTGGTA
AAAAGCAGCCTTTCCCGTTTGCGCCGGCCATCGCAGCCGGGAGCGCTGTAAGTTACTTTTACGGTGAAGAGCTGTTCGCG
TTTTACATCACACTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.258

99.2

0.568