Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   POF60_RS00270 Genome accession   NZ_CP116705
Coordinates   32660..33421 (+) Length   253 a.a.
NCBI ID   WP_001266266.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 dCas9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27660..38421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF60_RS00255 (POF60_00255) - 28958..30295 (+) 1338 WP_000746074.1 CHAP domain-containing protein -
  POF60_RS00260 (POF60_00260) - 30419..31387 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  POF60_RS00265 (POF60_00265) - 31495..32670 (+) 1176 WP_000171462.1 pyridoxal phosphate-dependent aminotransferase -
  POF60_RS00270 (POF60_00270) recO 32660..33421 (+) 762 WP_001266266.1 DNA repair protein RecO Machinery gene
  POF60_RS00275 (POF60_00275) - 33484..34362 (+) 879 WP_000420133.1 type II CAAX endopeptidase family protein -
  POF60_RS00280 (POF60_00280) plsX 34440..35432 (+) 993 WP_000717415.1 phosphate acyltransferase PlsX -
  POF60_RS00285 (POF60_00285) - 35443..35682 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  POF60_RS00290 (POF60_00290) purC 35806..36510 (+) 705 WP_000184490.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29643.11 Da        Isoelectric Point: 6.0865

>NTDB_id=710873 POF60_RS00270 WP_001266266.1 32660..33421(+) (recO) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKMMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=710873 POF60_RS00270 WP_001266266.1 32660..33421(+) (recO) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGAAAAATGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.71

98.024

0.625