Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NNG64_RS11635 Genome accession   NZ_CP101610
Coordinates   2395343..2397172 (-) Length   609 a.a.
NCBI ID   WP_099745180.1    Uniprot ID   -
Organism   Bacillus siamensis strain WYJ-E14     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2390343..2402172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS11600 (NNG64_11575) - 2390914..2391549 (-) 636 WP_016938218.1 GTP pyrophosphokinase family protein -
  NNG64_RS11605 (NNG64_11580) - 2391577..2391942 (-) 366 WP_016938219.1 hypothetical protein -
  NNG64_RS11610 (NNG64_11585) - 2392067..2392642 (+) 576 WP_060963080.1 CYTH domain-containing protein -
  NNG64_RS11615 (NNG64_11590) - 2392647..2393333 (+) 687 WP_060963081.1 lytic transglycosylase domain-containing protein -
  NNG64_RS11620 (NNG64_11595) - 2393558..2393956 (+) 399 WP_016938222.1 thiol management oxidoreductase -
  NNG64_RS11625 (NNG64_11600) spxH 2393953..2394855 (+) 903 WP_060963082.1 protease adaptor protein SpxH -
  NNG64_RS11630 (NNG64_11605) - 2395141..2395308 (+) 168 WP_016938224.1 hypothetical protein -
  NNG64_RS11635 (NNG64_11610) pepF 2395343..2397172 (-) 1830 WP_099745180.1 oligoendopeptidase F Regulator
  NNG64_RS11640 (NNG64_11615) - 2397401..2398561 (-) 1161 WP_060963083.1 competence protein CoiA family protein -
  NNG64_RS11645 (NNG64_11620) mecA 2398712..2399368 (-) 657 WP_060963084.1 adaptor protein MecA Regulator
  NNG64_RS11650 (NNG64_11625) - 2399359..2399461 (-) 103 Protein_2269 hypothetical protein -
  NNG64_RS11655 (NNG64_11630) - 2399644..2400300 (+) 657 WP_060963085.1 TerC family protein -
  NNG64_RS11660 (NNG64_11635) spx 2400358..2400753 (-) 396 WP_003327578.1 transcriptional regulator Spx -
  NNG64_RS11665 (NNG64_11640) - 2400932..2401510 (-) 579 WP_045925331.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69773.52 Da        Isoelectric Point: 5.4412

>NTDB_id=710864 NNG64_RS11635 WP_099745180.1 2395343..2397172(-) (pepF) [Bacillus siamensis strain WYJ-E14]
MTEENKAAQLPDRSEVKAEHTWRLEDIFPSDEAWNKEFQAVKELIPNLSSFKGTLAHSADNLYAALTAQDEVTSRLGKLY
AYAHMRSDQDTGNSFYQGLNDKAASLYSQAASATAYIEPEILAIQEDKLHQFILEKEELKLYSHAIEEITKQRPHVLSER
EEALLAEASEALSSPSNTFSVLNNADITFPSIKDEDGKETQITHGNFINFLESSDREVRKNAFKAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLIKTINKHLPLLHRYIDLRKKVLGLDEVHIYDLYTPLVKDSGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRSGAYSSGTYGTNPYILMNWHDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYMLNSLKDEKQRLYLLNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLSKLYYDLNKKYFGDNMVIDKEISLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVERYTEFL
KAGSSEYPIDILKKAGVDMTSPEPIEAACKMFEEKLNEMEELLSKVNPS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=710864 NNG64_RS11635 WP_099745180.1 2395343..2397172(-) (pepF) [Bacillus siamensis strain WYJ-E14]
ATGACTGAGGAAAATAAAGCAGCACAGCTGCCTGACAGAAGTGAAGTAAAGGCAGAGCATACATGGAGACTAGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCGGTTAAAGAATTAATTCCGAATTTATCTTCCTTTAAAGGCA
CGCTTGCTCATTCAGCCGATAATTTATACGCGGCGCTTACCGCACAGGATGAAGTGACGAGCCGTCTGGGGAAACTTTAT
GCATACGCGCATATGCGTTCAGACCAGGATACGGGAAATTCTTTCTACCAAGGGCTGAACGACAAAGCCGCAAGTCTGTA
TTCTCAGGCTGCCAGCGCGACTGCTTATATTGAACCGGAAATTCTGGCGATTCAGGAGGACAAGCTGCATCAGTTTATTC
TGGAAAAAGAGGAGCTGAAGCTTTATTCCCATGCAATTGAAGAAATTACAAAACAGCGTCCGCACGTGCTGAGTGAAAGA
GAAGAGGCCCTGCTTGCGGAAGCGTCAGAAGCGCTGTCTTCGCCTTCCAATACATTCAGTGTGTTAAATAACGCTGATAT
TACGTTTCCGTCGATTAAAGATGAAGACGGCAAGGAAACTCAAATCACACACGGCAACTTTATTAATTTTCTGGAAAGCA
GCGACCGGGAAGTCCGTAAAAACGCCTTTAAAGCCGTATATAAAACATACGGACAGTATAAAAACACAATGGCGACTACA
CTCAGCGGCACTGTGAAAAAAGACAATTTCTACGCCCGCGTGAAAAAATACAAATCAGCACGGGAAGCGGCTTTATCCAA
TAACAGCATCCCTGAAGAAGTTTATGATAACCTGATCAAAACGATCAATAAACACCTTCCGTTATTACACCGTTACATTG
ATCTGCGGAAAAAGGTGCTCGGCCTTGATGAAGTCCATATTTATGACCTGTACACACCGCTTGTAAAAGATTCGGGAATG
AAGGTCACATATGAGGAAGCAAAAGATTATATGCTCAAAGGGCTTGCTCCGTTAGGCGAGGAATACGCGTCTATTTTAAA
AGAAGGACTTGAAAACCGCTGGGTCGATGTATACGAAAACAAAGGAAAACGCAGCGGTGCTTATTCGTCCGGTACATACG
GCACGAATCCGTACATCTTGATGAACTGGCATGACAATGTCAACAACCTGTTTACGCTCGTTCACGAGTTCGGCCATTCC
GTGCACAGCTATTATACGAGAAAATATCAGCCGTATCCGTACGGAAACTACAGCATTTTTGTCGCTGAAGTCGCTTCTAC
GACCAATGAAGCGCTGCTTGGTGAATACATGCTGAACAGCTTAAAAGATGAAAAACAGCGTCTGTACCTGCTCAACCACA
TGCTTGAAGGTTTCAGAGGCACAGTCTTCAGACAGACGATGTTCGCTGAATTTGAGCATCTGATTCATACGAAAGCGCAA
GAAGGCGAGCCGCTGACGCCTGAACTGCTGAGCAAGCTTTATTATGATCTCAATAAAAAGTATTTCGGAGACAACATGGT
GATTGATAAAGAAATCAGCCTGGAATGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTGTATCAATATGCGACAG
GCTACAGTGCGGCCCAAGCGCTGAGCAGCCAGATCTTAAAAGAAGGCAAGCCTGCGGTTGAGCGTTATACCGAATTCTTA
AAAGCGGGAAGCTCAGAATACCCGATCGACATACTGAAAAAAGCGGGAGTCGATATGACATCGCCTGAACCGATCGAGGC
GGCCTGCAAAATGTTTGAAGAGAAACTGAATGAAATGGAAGAACTGCTTTCGAAAGTGAACCCTTCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

97.537

0.488