Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   G6M09_RS09955 Genome accession   NZ_CP116700
Coordinates   2016185..2017150 (+) Length   321 a.a.
NCBI ID   WP_013636757.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain A47a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2011185..2022150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M09_RS09930 (G6M09_009930) - 2011476..2012420 (+) 945 WP_065702598.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  G6M09_RS09935 (G6M09_009935) - 2012417..2012911 (+) 495 WP_013636754.1 tripartite tricarboxylate transporter TctB family protein -
  G6M09_RS09940 (G6M09_009940) - 2013019..2014536 (+) 1518 WP_003514036.1 tripartite tricarboxylate transporter permease -
  G6M09_RS09945 (G6M09_009945) - 2014666..2014926 (+) 261 WP_003514037.1 hypothetical protein -
  G6M09_RS09950 (G6M09_009950) - 2015127..2016065 (+) 939 WP_013636756.1 siderophore ABC transporter substrate-binding protein -
  G6M09_RS09955 (G6M09_009955) ceuB 2016185..2017150 (+) 966 WP_013636757.1 ABC transporter permease Machinery gene
  G6M09_RS09960 (G6M09_009960) - 2017143..2018111 (+) 969 WP_003514044.1 iron chelate uptake ABC transporter family permease subunit -
  G6M09_RS09965 (G6M09_009965) - 2018108..2018866 (+) 759 WP_003514045.1 ABC transporter ATP-binding protein -
  G6M09_RS09970 (G6M09_009970) dps 2018992..2019480 (+) 489 WP_003514046.1 DNA starvation/stationary phase protection protein Dps -
  G6M09_RS09975 (G6M09_009975) - 2019558..2019779 (-) 222 WP_013636760.1 hypothetical protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34190.20 Da        Isoelectric Point: 11.0429

>NTDB_id=710862 G6M09_RS09955 WP_013636757.1 2016185..2017150(+) (ceuB) [Agrobacterium tumefaciens strain A47a]
MKSLSLILALLLALTLAIVSLFVGVSNVSLATLFAPDTSADALRVLLVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFV
EPSTAGTTESAGLGLLTVTLLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVISAVTTFFAY
RFDLLQSLGAWMTGDFSGVLRGRYELLWIGFVFAIAAYLAADRFTVAGMGRDFTTNLGLNYRRVMALGLTIVSLVSAVVV
VTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLACDIIGRTVRAPYEIPIGTVVGVIGSALFLYLLLRKRHH
A

Nucleotide


Download         Length: 966 bp        

>NTDB_id=710862 G6M09_RS09955 WP_013636757.1 2016185..2017150(+) (ceuB) [Agrobacterium tumefaciens strain A47a]
GTGAAATCCCTGTCCCTCATCCTCGCCCTCCTTCTGGCGCTGACACTCGCCATCGTCAGCCTGTTCGTCGGCGTGAGCAA
CGTCTCGCTAGCGACGCTTTTTGCGCCGGATACGAGCGCGGATGCATTGCGCGTGCTCCTAGTCAGCCGCATTCCGCGCA
CGCTGGCGCTCATACTGGCCGGAAGCTCGATGGCGATTGCCGGTCTCATCATGCAGATGCTGGTGCGCAACCGCTTCGTG
GAGCCTTCGACGGCTGGCACCACCGAATCCGCCGGCCTTGGCCTGCTCACCGTCACCCTGCTTGCCCCGGAAACGCCGAT
CTTCGGCAAGATGTTGGTGGCCGCCGCTTTCGCGCTGGCGGGAACCGCACTTTTCCTTCGTATTCTACGGCAGGTGCCGC
TACGCGATGTGCTGCTGGTGCCGCTGATCGGCATCATGCTGGGCGGCGTCATTTCTGCCGTCACCACTTTCTTCGCCTAT
CGTTTCGATCTGCTGCAATCGCTCGGCGCGTGGATGACCGGGGATTTTTCCGGCGTGCTGCGTGGCCGCTATGAATTGCT
GTGGATCGGCTTCGTTTTCGCCATCGCTGCCTATCTAGCCGCCGACCGTTTCACGGTGGCAGGCATGGGGCGCGACTTCA
CCACCAATCTCGGACTGAACTATCGCCGGGTGATGGCGCTTGGCCTCACCATCGTCTCGCTGGTCAGTGCCGTCGTCGTC
GTGACCGTCGGTATGATCCCCTTTCTCGGCCTGATCGTGCCGAATGTGGTCAGCCTGATGATCGGCGACAATATGCGCCG
TTCCGTGCCCTGGGTGGCGACGCTTGGCGCGGTCTTCGTTCTTGCCTGCGACATCATCGGCAGAACGGTGCGCGCGCCCT
ATGAGATACCGATCGGAACCGTGGTCGGCGTCATCGGCAGCGCGTTGTTCCTCTATCTCCTGCTCCGGAAACGCCACCAT
GCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.574

99.377

0.433