Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   G6M09_RS05400 Genome accession   NZ_CP116700
Coordinates   1088617..1089639 (-) Length   340 a.a.
NCBI ID   WP_003515235.1    Uniprot ID   A0A1B9U400
Organism   Agrobacterium tumefaciens strain A47a     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083617..1094639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M09_RS05385 (G6M09_005385) - 1085370..1086224 (-) 855 WP_065702521.1 sugar phosphate isomerase/epimerase family protein -
  G6M09_RS05390 (G6M09_005390) - 1086353..1087522 (-) 1170 WP_065702520.1 Gfo/Idh/MocA family protein -
  G6M09_RS05395 (G6M09_005395) - 1087534..1088583 (-) 1050 WP_065702519.1 sugar phosphate isomerase/epimerase family protein -
  G6M09_RS05400 (G6M09_005400) cytR 1088617..1089639 (-) 1023 WP_003515235.1 LacI family DNA-binding transcriptional regulator Regulator
  G6M09_RS05405 (G6M09_005405) - 1089643..1090611 (-) 969 WP_003515236.1 ABC transporter permease -
  G6M09_RS05410 (G6M09_005410) - 1090613..1091557 (-) 945 WP_019566277.1 ABC transporter permease -
  G6M09_RS05415 (G6M09_005415) - 1091554..1093047 (-) 1494 WP_065702518.1 sugar ABC transporter ATP-binding protein -
  G6M09_RS05420 (G6M09_005420) - 1093167..1094189 (-) 1023 WP_003515239.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36661.72 Da        Isoelectric Point: 6.1739

>NTDB_id=710854 G6M09_RS05400 WP_003515235.1 1088617..1089639(-) (cytR) [Agrobacterium tumefaciens strain A47a]
MSKDQGSNIREVAALAGVSIATVSRALQQPDKVRPETRKKVFDAVRQANFVPNAQAASFRRQSNNTVILLVRDIGNPFYL
EIYKGVEEAAGEAGFKVLMGDARNDENRVATHIDMVRQKHADGLILMTGQFPSELLGQGDALPPIVIASETVPGIALPTV
KVDNRAASKNAVHHLIEAGHTKIAHLAGPFPESLAQERFEGYRDALEEAGIGYADELVVTGDYSIEAGRQAIAGLLENGI
SFTAIFASSDQMAIGAISELRGRGLSVPTDVSVIGFDDIIFANAFEPPLTTVRQPRQEMGRKAMALMVDRLNGKRTAETI
VLDTELVVRGSVAPCRSPHR

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=710854 G6M09_RS05400 WP_003515235.1 1088617..1089639(-) (cytR) [Agrobacterium tumefaciens strain A47a]
ATGAGCAAAGACCAAGGTTCGAATATCAGGGAAGTTGCAGCTCTCGCGGGCGTTTCAATTGCGACCGTGTCACGGGCGCT
GCAACAACCCGACAAAGTCCGCCCGGAAACGAGGAAGAAGGTTTTCGATGCCGTCAGGCAGGCAAACTTTGTTCCCAACG
CCCAGGCCGCAAGCTTCAGGCGTCAATCCAACAATACCGTCATTCTTCTCGTTCGCGATATCGGCAACCCGTTTTATCTC
GAGATCTACAAGGGCGTGGAGGAAGCGGCGGGGGAGGCGGGCTTCAAGGTGCTCATGGGCGACGCCCGTAACGACGAAAA
CCGCGTGGCGACACATATCGACATGGTCAGGCAGAAACATGCTGACGGCCTCATCCTGATGACCGGCCAGTTTCCTTCAG
AGCTTCTCGGTCAGGGTGACGCGCTGCCGCCGATCGTCATCGCTTCGGAAACCGTGCCAGGCATCGCGCTGCCCACCGTC
AAGGTCGATAACCGCGCCGCGTCCAAAAACGCCGTGCATCATCTGATCGAAGCAGGGCACACGAAGATCGCACATCTCGC
CGGACCTTTTCCGGAAAGTCTGGCACAGGAGCGTTTCGAGGGCTACCGCGACGCGCTTGAGGAAGCGGGTATCGGTTACG
CGGATGAACTCGTCGTGACAGGCGATTACAGCATCGAAGCCGGTAGACAGGCGATTGCCGGACTTCTCGAAAACGGCATT
TCCTTCACCGCCATCTTCGCCTCGAGCGACCAGATGGCGATTGGCGCGATCAGCGAGCTGCGCGGGCGCGGGCTGTCCGT
GCCGACCGATGTCTCGGTTATTGGCTTCGACGATATAATTTTCGCCAATGCTTTCGAACCACCGCTAACTACAGTGCGCC
AGCCCCGGCAGGAAATGGGCCGCAAAGCCATGGCGCTGATGGTCGACCGGCTTAATGGCAAACGCACGGCCGAAACCATC
GTGCTGGATACGGAACTGGTGGTGCGCGGCTCGGTCGCGCCCTGCCGTTCGCCGCACCGGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(172-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9U400

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

44.242

97.059

0.429
  cytR Vibrio cholerae C6706

44.242

97.059

0.429