Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NNG64_RS05745 Genome accession   NZ_CP101610
Coordinates   1084336..1084671 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus siamensis strain WYJ-E14     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079336..1089671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS05695 (NNG64_05685) comGC 1079527..1079835 (+) 309 WP_016938966.1 competence type IV pilus major pilin ComGC Machinery gene
  NNG64_RS05700 (NNG64_05690) comGD 1079825..1080262 (+) 438 WP_060964765.1 competence type IV pilus minor pilin ComGD Machinery gene
  NNG64_RS05705 (NNG64_05695) comGE 1080246..1080560 (+) 315 WP_060964766.1 competence type IV pilus minor pilin ComGE Machinery gene
  NNG64_RS05710 (NNG64_05700) comGF 1080472..1080969 (+) 498 WP_235588382.1 competence type IV pilus minor pilin ComGF -
  NNG64_RS05715 (NNG64_05705) comGG 1080970..1081347 (+) 378 WP_060964768.1 competence type IV pilus minor pilin ComGG Machinery gene
  NNG64_RS05720 (NNG64_05710) - 1081404..1081583 (+) 180 WP_022552966.1 YqzE family protein -
  NNG64_RS05725 (NNG64_05715) - 1081624..1081953 (-) 330 WP_016938972.1 DUF3889 domain-containing protein -
  NNG64_RS05730 (NNG64_05720) tapA 1082212..1082883 (+) 672 WP_060964769.1 amyloid fiber anchoring/assembly protein TapA -
  NNG64_RS05735 (NNG64_05725) sipW 1082855..1083439 (+) 585 WP_060964770.1 signal peptidase I SipW -
  NNG64_RS05740 (NNG64_05730) tasA 1083503..1084288 (+) 786 WP_016938976.1 biofilm matrix protein TasA -
  NNG64_RS05745 (NNG64_05735) sinR 1084336..1084671 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NNG64_RS05750 (NNG64_05740) sinI 1084705..1084878 (-) 174 WP_016938977.1 anti-repressor SinI Regulator
  NNG64_RS05755 (NNG64_05745) - 1085055..1085849 (-) 795 WP_060964771.1 YqhG family protein -
  NNG64_RS05760 (NNG64_05750) - 1085871..1087541 (-) 1671 WP_060964772.1 DEAD/DEAH box helicase -
  NNG64_RS05765 (NNG64_05755) gcvT 1087965..1089065 (+) 1101 WP_060964773.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=710849 NNG64_RS05745 WP_003226345.1 1084336..1084671(-) (sinR) [Bacillus siamensis strain WYJ-E14]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=710849 NNG64_RS05745 WP_003226345.1 1084336..1084671(-) (sinR) [Bacillus siamensis strain WYJ-E14]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGTGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1