Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   G6L96_RS12940 Genome accession   NZ_CP116696
Coordinates   2644432..2646240 (+) Length   602 a.a.
NCBI ID   WP_112154875.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CG920     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2639432..2651240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L96_RS12940 (G6L96_012940) recQ 2644432..2646240 (+) 1809 WP_112154875.1 DNA helicase RecQ Machinery gene
  G6L96_RS12945 (G6L96_012945) - 2646295..2647527 (-) 1233 WP_038489293.1 ROK family transcriptional regulator -
  G6L96_RS12950 (G6L96_012950) - 2647794..2648816 (+) 1023 WP_003514241.1 sugar ABC transporter substrate-binding protein -
  G6L96_RS12955 (G6L96_012955) - 2649039..2650121 (+) 1083 WP_112154847.1 ABC transporter permease -
  G6L96_RS12960 (G6L96_012960) - 2650121..2650903 (+) 783 WP_013635211.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67008.78 Da        Isoelectric Point: 6.4507

>NTDB_id=710835 G6L96_RS12940 WP_112154875.1 2644432..2646240(+) (recQ) [Agrobacterium tumefaciens strain CG920]
MITDPLQILKTVYGYDTFRGQQAEIIRHVMAGNNAFVLMPTGGGKSLCYQIPALARKGMGLVVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRVLWQDMRAGKVDILYAAPETLLKPDVLDALQPISLSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADEPTRAEILGHLGINGSDAFIAGFDRPNIRYAIMEKDNPRTQLKRFLTGREDESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREANQTHFQHGEAVIMVATVAFGMGIDKPDVRFVVHIDLPSSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAGDQRKNMERRKLDALLGLAETAGCRRRVLLSYFGDYCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGMEDERISSFGHDRITTYGIGKEHDNRTWRAILRQMVALRLIEVDLAG
HGGLSISEEGRRFLREKPSLMLRIPTAPRSARQQTNRKPTAIVLPDADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELAAARPASVGEMAQIPGVGDSKLERYGPAFLAAIMEHAASE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=710835 G6L96_RS12940 WP_112154875.1 2644432..2646240(+) (recQ) [Agrobacterium tumefaciens strain CG920]
GTGATCACCGACCCCTTGCAGATTCTCAAGACCGTCTATGGCTACGATACGTTTCGTGGACAGCAGGCCGAAATCATCCG
GCATGTGATGGCAGGCAACAATGCTTTTGTGTTGATGCCAACAGGGGGCGGGAAGTCGCTTTGTTACCAGATTCCGGCGC
TCGCCCGTAAGGGAATGGGGCTGGTTGTTTCGCCCCTGATCGCGCTGATGGTTGATCAGGTCGCCGCCTTGCGTCAGGCA
GGTGTGCGGGCAGAAGCTCTCAACTCCGATCTTTCCCCAGAAGAGCGGCGGGTACTCTGGCAGGATATGCGGGCTGGCAA
GGTCGATATTCTCTATGCCGCGCCGGAGACCCTTCTCAAGCCGGATGTTCTGGATGCGCTTCAACCTATCAGCCTGTCGC
TAATCGCCATCGACGAAGCTCATTGCCTGTCGCAGTGGGGGCACGATTTCCGTCCCCCTTACCGCCAGCTAGACACGTTG
ATCGAGCGCTTTCCGGATACGCCACGCATGGCGCTGACGGCGACTGCGGACGAGCCAACCCGCGCCGAAATTCTGGGTCA
TCTCGGGATCAACGGAAGCGACGCCTTCATAGCCGGATTCGATCGGCCAAATATCCGCTATGCGATCATGGAAAAGGATA
ATCCACGTACGCAGCTGAAGCGCTTCCTGACGGGTCGCGAGGACGAAAGCGGCATCGTCTATTGCCTTTCCAAACGCAAG
GTCGATGAGACGGCAGCCTGGCTGCGCGAGGAGGGGCGCGATGCGCTGCCCTATCACGCCGGCATGGACAAGGCCGCCCG
CGAGGCGAACCAGACCCACTTCCAGCATGGTGAAGCGGTCATCATGGTTGCAACCGTGGCTTTCGGCATGGGCATCGACA
AACCGGATGTGCGCTTCGTCGTGCATATCGATCTGCCCAGCAGCATCGAAGCCTATTATCAGGAAACCGGCCGTGCCGGC
CGTGATGGTCTGCCGTCCGACGTGCTTATGCTTTACGGTTATGAAGACATCGCATTGCGCAACCGCTTTATCGAAGAGTC
GGATGCGGGCGACCAGCGCAAGAACATGGAGCGCCGGAAGCTCGATGCGTTGCTTGGCCTCGCGGAAACAGCCGGTTGCC
GTCGGCGGGTGCTTTTGTCTTATTTCGGCGACTATTGCGAGCCCTGCGGCAATTGCGACACCTGTGCGGAGCCGCCGGAC
CTGTTTGATGGTGCCATTGCCGCGCAGAAGTTGCTGTCCTGCATTTACCGCACGGGAGAACGTTTTGGCCAGGCCTATGT
CATCCGCGTATTGCTGGGCATGGAAGATGAACGGATATCGAGCTTTGGTCACGATCGGATCACGACCTACGGCATCGGCA
AAGAGCACGACAATCGCACCTGGCGGGCCATCCTGCGCCAGATGGTTGCGCTGCGCCTGATCGAGGTTGATCTGGCCGGT
CACGGGGGATTGTCCATTTCCGAAGAAGGGAGGCGATTCCTGCGCGAAAAGCCGTCCCTGATGTTGAGGATACCGACCGC
TCCCCGTTCGGCGCGACAACAGACGAATCGCAAGCCCACCGCCATTGTTTTACCGGATGCCGATCGCAGTCTCTTTGAGG
CGCTGCGTGCGAAGCGCATGGAAATTGCCCGCGCGCAGAACGTTCCGCCCTATGTGATTTTTCACGACAAGACACTCATT
GAGCTTGCGGCAGCAAGACCGGCGTCTGTGGGAGAAATGGCGCAGATACCCGGAGTGGGAGACTCAAAGCTGGAACGATA
CGGCCCTGCTTTTCTGGCAGCGATCATGGAACATGCCGCCAGCGAGTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

Helicase conserved C-terminal domain (Helicase_C)

(220-322)

HRDC domain (HRDC)

(530-595)

RQC domain (RQC)

(398-510)

DEAD/DEAH box helicase (DEAD)

(22-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.811

100

0.379