Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K6J70_RS05065 Genome accession   NZ_AP018774
Coordinates   1024088..1026454 (+) Length   788 a.a.
NCBI ID   WP_105197542.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-3 isolate 13H42     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019088..1031454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J70_RS05040 (CHBNIII3_09520) - 1019436..1020734 (-) 1299 WP_005687525.1 N-acetylmuramoyl-L-alanine amidase -
  K6J70_RS05045 (CHBNIII3_09530) tsaE 1020742..1021218 (-) 477 WP_005693857.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  K6J70_RS05050 (CHBNIII3_09540) folK 1021294..1021776 (-) 483 WP_005687519.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K6J70_RS05055 (CHBNIII3_09550) pcnB 1021785..1023143 (-) 1359 WP_041174711.1 polynucleotide adenylyltransferase PcnB -
  K6J70_RS05060 (CHBNIII3_09560) dksA 1023391..1023828 (-) 438 WP_005657744.1 RNA polymerase-binding protein DksA -
  K6J70_RS05065 (CHBNIII3_09570) rec2 1024088..1026454 (+) 2367 WP_105197542.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K6J70_RS05070 (CHBNIII3_09580) msbA 1026495..1028258 (+) 1764 WP_005687513.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K6J70_RS05075 (CHBNIII3_09590) lpxK 1028331..1029329 (+) 999 WP_005687511.1 tetraacyldisaccharide 4'-kinase -
  K6J70_RS05080 (CHBNIII3_09600) kdsB 1029400..1030164 (+) 765 WP_005687509.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89531.12 Da        Isoelectric Point: 10.0552

>NTDB_id=71083 K6J70_RS05065 WP_105197542.1 1024088..1026454(+) (rec2) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLLQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLANNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADVSSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQSNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLAFGVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPLQLFTVVVGFLLF
CNPLMPLSVSFWLSCEAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFFWQLANKLAEGSTGLISVFQGNWLTVSFNLALFLTALCAGIFMLIIWRIYREPE
ASSSTWKIKRPRFFTLNLSKPLLKNERINVLRCSFGIILMCFMILLFKQFSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSQKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=71083 K6J70_RS05065 WP_105197542.1 1024088..1026454(+) (rec2) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
ATGAAATTAAACTTAATCACTTTAGCTGTCTTGTTAATTGTCGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGCGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCGCGATTAAATTTCGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACGGCTGTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGGATGTTTCATCATTGCGAGCAGAAAAATTGCAACA
AGTGAAAAAACAAACAGAAGGGTTGTCCTTACAAGGTTTATTGATTGCCTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAACCACTTGGTCAATTTACCAACAAAGCAATACCGCGCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGGATTGGATTTTACTTGGCGCGTGTTGTGCAAGTATTTTTCCCCACCCGTTTTATTCATCCTTATTTTCCTTTAGCTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCCTTCAGCTTTTTACGGTGGTTGTCGGATTCTTGCTTTTC
TGCAATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGAGGCAGTTGGGTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGCCCCTTTTCACCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACAATGTTTTT
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAAGTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTATCGAGAACCAGAG
GCTTCATCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTGAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCGATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTTAGTAAGCCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCAACAATTTTAAAGGCGTATCCCAATGTGGAAT
TAATTACCCCTTCGCAAAAAAATTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTGCATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTAATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTGCTAACTGGCGACGCTGAAGCAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Competence protein (Competence)

(204-473)

Domain of unknown function (DUF4131) (DUF4131)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

96.193

100

0.962

Multiple sequence alignment