Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   G6L96_RS10740 Genome accession   NZ_CP116696
Coordinates   2143677..2144642 (+) Length   321 a.a.
NCBI ID   WP_013636757.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CG920     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2138677..2149642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L96_RS10715 (G6L96_010715) - 2138969..2139913 (+) 945 WP_003514032.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  G6L96_RS10720 (G6L96_010720) - 2139910..2140404 (+) 495 WP_013636754.1 tripartite tricarboxylate transporter TctB family protein -
  G6L96_RS10725 (G6L96_010725) - 2140512..2142029 (+) 1518 WP_003514036.1 tripartite tricarboxylate transporter permease -
  G6L96_RS10730 (G6L96_010730) - 2142158..2142418 (+) 261 WP_003514037.1 hypothetical protein -
  G6L96_RS10735 (G6L96_010735) - 2142619..2143557 (+) 939 WP_112154320.1 siderophore ABC transporter substrate-binding protein -
  G6L96_RS10740 (G6L96_010740) ceuB 2143677..2144642 (+) 966 WP_013636757.1 ABC transporter permease Machinery gene
  G6L96_RS10745 (G6L96_010745) - 2144635..2145603 (+) 969 WP_112154321.1 iron chelate uptake ABC transporter family permease subunit -
  G6L96_RS10750 (G6L96_010750) - 2145600..2146358 (+) 759 WP_112154322.1 ABC transporter ATP-binding protein -
  G6L96_RS10755 (G6L96_010755) dps 2146484..2146972 (+) 489 WP_003514046.1 DNA starvation/stationary phase protection protein Dps -
  G6L96_RS10760 (G6L96_010760) - 2147050..2147271 (-) 222 WP_013636760.1 hypothetical protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34190.20 Da        Isoelectric Point: 11.0429

>NTDB_id=710827 G6L96_RS10740 WP_013636757.1 2143677..2144642(+) (ceuB) [Agrobacterium tumefaciens strain CG920]
MKSLSLILALLLALTLAIVSLFVGVSNVSLATLFAPDTSADALRVLLVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFV
EPSTAGTTESAGLGLLTVTLLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVISAVTTFFAY
RFDLLQSLGAWMTGDFSGVLRGRYELLWIGFVFAIAAYLAADRFTVAGMGRDFTTNLGLNYRRVMALGLTIVSLVSAVVV
VTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLACDIIGRTVRAPYEIPIGTVVGVIGSALFLYLLLRKRHH
A

Nucleotide


Download         Length: 966 bp        

>NTDB_id=710827 G6L96_RS10740 WP_013636757.1 2143677..2144642(+) (ceuB) [Agrobacterium tumefaciens strain CG920]
GTGAAATCCCTGTCCCTCATCCTCGCCCTCCTTCTGGCGCTGACACTCGCCATCGTCAGCCTGTTCGTCGGTGTGAGCAA
CGTCTCGCTGGCGACGCTTTTTGCGCCGGATACGAGCGCGGATGCACTGCGCGTGCTCCTCGTCAGCCGCATTCCGCGCA
CGCTGGCGCTCATACTGGCGGGAAGCTCGATGGCGATTGCCGGTCTCATCATGCAGATGCTGGTGCGCAACCGCTTCGTG
GAGCCTTCGACGGCTGGCACCACCGAATCCGCCGGCCTTGGCCTGCTCACCGTCACCCTGCTTGCCCCGGAAACGCCGAT
CTTCGGCAAGATGTTGGTGGCCGCCGCTTTCGCGCTGGCGGGAACCGCACTTTTCCTGCGTATTCTACGGCAGGTGCCAC
TGCGCGATGTGCTGCTGGTGCCGCTGATCGGCATCATGCTGGGCGGCGTCATTTCTGCCGTCACCACTTTCTTCGCCTAT
CGTTTCGATCTGCTGCAATCGCTCGGCGCGTGGATGACCGGGGATTTTTCCGGCGTGCTGCGTGGCCGCTATGAATTGCT
GTGGATCGGCTTCGTTTTCGCCATCGCCGCCTATCTCGCCGCCGACCGTTTCACGGTGGCAGGCATGGGGCGCGACTTCA
CCACCAATCTCGGACTGAACTATCGCCGGGTGATGGCGCTCGGCCTCACCATCGTCTCGCTGGTCAGTGCCGTCGTCGTC
GTCACGGTGGGTATGATCCCCTTTCTCGGCCTGATTGTGCCGAATGTGGTCAGCCTGATGATCGGCGACAATATGCGCCG
TTCCGTGCCCTGGGTGGCGACGCTTGGCGCGGTCTTCGTTCTTGCCTGCGACATCATCGGCAGAACGGTGCGCGCGCCCT
ATGAGATACCGATCGGAACCGTGGTCGGCGTCATCGGCAGCGCGCTGTTCCTCTATCTCCTGCTCCGGAAACGCCACCAT
GCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.574

99.377

0.433