Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NNG64_RS00250 Genome accession   NZ_CP101610
Coordinates   45617..45907 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus siamensis strain WYJ-E14     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40617..50907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS00210 (NNG64_00210) darA 40634..40963 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  NNG64_RS00215 (NNG64_00215) - 40976..41416 (+) 441 WP_047478049.1 YaaR family protein -
  NNG64_RS00220 (NNG64_00220) holB 41428..42417 (+) 990 WP_060963779.1 DNA polymerase III subunit delta' -
  NNG64_RS00225 (NNG64_00225) ricT 42420..43247 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  NNG64_RS00230 (NNG64_00230) yabA 43262..43621 (+) 360 WP_016936514.1 replication initiation-control protein YabA -
  NNG64_RS00235 (NNG64_00235) - 43682..44425 (+) 744 WP_049627760.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NNG64_RS00240 (NNG64_00240) - 44412..44711 (+) 300 WP_047478056.1 GIY-YIG nuclease family protein -
  NNG64_RS00245 (NNG64_00245) rsmI 44686..45567 (+) 882 WP_060963778.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NNG64_RS00250 (NNG64_00250) abrB 45617..45907 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  NNG64_RS00255 (NNG64_00255) metG 46391..48382 (+) 1992 WP_060963777.1 methionine--tRNA ligase -
  NNG64_RS00260 (NNG64_00260) - 48458..49225 (+) 768 WP_060963776.1 TatD family hydrolase -
  NNG64_RS00265 (NNG64_00265) - 49360..50685 (+) 1326 WP_101605623.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=710824 NNG64_RS00250 WP_169510469.1 45617..45907(-) (abrB) [Bacillus siamensis strain WYJ-E14]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=710824 NNG64_RS00250 WP_169510469.1 45617..45907(-) (abrB) [Bacillus siamensis strain WYJ-E14]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAATCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979