Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NNG64_RS00020 Genome accession   NZ_CP101610
Coordinates   3030..4142 (+) Length   370 a.a.
NCBI ID   WP_060963790.1    Uniprot ID   -
Organism   Bacillus siamensis strain WYJ-E14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS00005 (NNG64_00005) dnaA 1..1341 (+) 1341 WP_016937312.1 chromosomal replication initiator protein DnaA -
  NNG64_RS00010 (NNG64_00010) dnaN 1526..2662 (+) 1137 WP_060963791.1 DNA polymerase III subunit beta -
  NNG64_RS00015 (NNG64_00015) rlbA 2799..3014 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  NNG64_RS00020 (NNG64_00020) recF 3030..4142 (+) 1113 WP_060963790.1 DNA replication/repair protein RecF Machinery gene
  NNG64_RS00025 (NNG64_00025) remB 4160..4405 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  NNG64_RS00030 (NNG64_00030) gyrB 4462..6378 (+) 1917 WP_060965087.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NNG64_RS00035 (NNG64_00035) gyrA 6595..9054 (+) 2460 WP_060963789.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42472.40 Da        Isoelectric Point: 6.8976

>NTDB_id=710822 NNG64_RS00020 WP_060963790.1 3030..4142(+) (recF) [Bacillus siamensis strain WYJ-E14]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTEQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=710822 NNG64_RS00020 WP_060963790.1 3030..4142(+) (recF) [Bacillus siamensis strain WYJ-E14]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGAGAGAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGTTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCACATAGAACAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTCGCCCCGGAGGACTTAAATCTCGTCAAAGGCAGCCCGCAGGTCAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
GGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGAGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGCA
TTTCCCGGGGGCTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCTAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGGGGCGTCACCTTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATTGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGACGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946