Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   G6L96_RS06925 Genome accession   NZ_CP116696
Coordinates   1406767..1408872 (+) Length   701 a.a.
NCBI ID   WP_112154614.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CG920     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1401767..1413872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L96_RS06910 (G6L96_006910) - 1402049..1402393 (-) 345 WP_013636325.1 hypothetical protein -
  G6L96_RS06915 (G6L96_006915) mfd 1402767..1406264 (-) 3498 WP_019566117.1 transcription-repair coupling factor -
  G6L96_RS06920 (G6L96_006920) - 1406268..1406579 (-) 312 WP_003515739.1 succinate dehydrogenase assembly factor 2 -
  G6L96_RS06925 (G6L96_006925) recG 1406767..1408872 (+) 2106 WP_112154614.1 ATP-dependent DNA helicase RecG Machinery gene
  G6L96_RS06930 (G6L96_006930) - 1408885..1409157 (+) 273 WP_003515743.1 hypothetical protein -
  G6L96_RS06935 (G6L96_006935) - 1409212..1409469 (+) 258 WP_003515745.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  G6L96_RS06940 (G6L96_006940) - 1409466..1409849 (+) 384 WP_035198363.1 type II toxin-antitoxin system VapC family toxin -
  G6L96_RS06945 (G6L96_006945) - 1409853..1410521 (-) 669 WP_003515749.1 DUF502 domain-containing protein -
  G6L96_RS06950 (G6L96_006950) - 1410535..1411038 (-) 504 WP_111804480.1 GNAT family N-acetyltransferase -
  G6L96_RS06955 (G6L96_006955) glmS 1411035..1412861 (-) 1827 WP_080798336.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76533.18 Da        Isoelectric Point: 7.1162

>NTDB_id=710822 G6L96_RS06925 WP_112154614.1 1406767..1408872(+) (recG) [Agrobacterium tumefaciens strain CG920]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHFATISKLANAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQESVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKNGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=710822 G6L96_RS06925 WP_112154614.1 1406767..1408872(+) (recG) [Agrobacterium tumefaciens strain CG920]
ATGCGTCCCGCCATTCTCGATCCGCTATTTGCTTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAACTTGCCGACCTTCT
GGCCAAACTGCTGAGCCGGGAAAATGCCGACGACACCCGCGTGATCGATCTTCTGTTCCACGCACCATCAAACGTCATCG
ACCGGCGCAACCGCCCGGGCATCGCGCTTGCCGCTCCCGGCGCCATTGTCACCATCCAGGGACGTGTCGACCGGCATCAG
CCAGCTCCACCGGGCAATCGTTCCGCGCCCTACCGTGTTTTCCTGCATGACGAGACCGGGGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGAGACTGGCTTTCCAAGGCCTTGCCCGTCGATGAAGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAGCTCTCCGAGGCAGAGAACCTGCCGCTGGTCGAAGCCGTT
TATCCGATGACAGCCGGGCTGTCTCCGAAGGTGCTGCGGCGGGCAATTGAAGGCGGACTTTCGAAACTGCCGGTCTTTCC
CGAATGGATCGACGAGACCCTGAAGACCCGTCAGGGGTTCGGCGACGTGGCATCGAGCTTCCGTGAATTGCACGACCCAC
GCGACAGCGCCGATATCGATCCTCAGGCCCCGGCACGCAGACGGCTCGCCTACGACGAATTCTTGGCCGGGCAGCTGTCA
CTGGCGCTGGTGCGGCAAAGACTGCGCAAGGTCGCGGGCCAGCCGATCCGCGCCAAGGGGGACATTGCTGCAAAAATCCT
GTCGCAACTGCCCTTCTCCCTGACGCCGAGCCAGAATGCCTCGGTGAAAGATATCCTGACCGATATGGCCAGCGAGGACC
GTATGTTGCGGCTGTTGCAGGGCGATGTCGGCGCGGGCAAGACGCTGGTGGCGCTGATGGCTATGGCAACCGCCGTCGAG
GCCGGCGGACAGGCGGTGTTGATGGCCCCGACCGAAATTCTTGCCCGGCAGCATTTCGCCACCATCTCCAAACTCGCCAA
TGCCGCGGGCATTACGGTTGAGGTGCTGACAGGCCGCACCAAGGGCAAGGAGCGTCGCGAGATCGAAGAACGCGTGGCCT
CCGGTGAGGCACAGATCGTCATCGGCACCCACGCGCTGTTCCAGGAGAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGATGAGCAGCACCGTTTCGGCGTACACCAGCGCCTGCGTCTCACCGCCAAGGGCATCACGCCGCATATGCTTGTTAT
GACCGCCACGCCCATTCCGCGCACGCTTGTGCTGGCCGCCTTCGGCGACATGGATGTGTCGAAACTCACCGAAAAACCGG
CCGGCCGAAAACCCATCCAGACCGTGACAATCCCCACAGAGCGCATCGGCGACATCGTCGAGCGGCTGCGCGCCGCGCTG
AAGGAGGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAGACGGAAGAGTCCGACCTGATGTCGGCGGAAGAACG
ACATGCGGTTCTCTCGCAGATGCTCGGTGCCAATATCGGTCTCATCCACGGGCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTGGCTTTTAAAAACGGCGAAACCCGGCTGCTGGTCGCAACGACAGTGGTGGAAGTGGGTGTCGACGTTCCGGAC
GCCACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTGGCTCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGACTTTCCATCCTGCGCG
ACAGCGAGGACGGCTTCCTGATTGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAACTCCTCGGCACCCGCCAGTCC
GGCACCCCGGGCTTCCGCATCGCCAGCCTCGAAGCCCATGCCGACCTCCTGGAAATCGCCCGCAAGGACGCCGCCTATGT
CATCGAGCGCGACCCCGAACTGACCGGCCCCCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CTATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

RecG wedge domain (RecG_wedge)

(18-180)

DEAD/DEAH box helicase (DEAD)

(275-432)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.018

94.722

0.398
  recG/mmsA Streptococcus pneumoniae R6

40.441

97.004

0.392
  recG/mmsA Streptococcus pneumoniae R36A

40.441

97.004

0.392
  recG Bacillus subtilis subsp. subtilis str. 168

38.517

98.146

0.378