Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NMH04_RS10790 Genome accession   NZ_CP101609
Coordinates   2110854..2111489 (+) Length   211 a.a.
NCBI ID   WP_050827323.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 47     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2105854..2116489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMH04_RS10750 (NMH04_10695) - 2106020..2107138 (+) 1119 WP_235672115.1 NADH-dependent flavin oxidoreductase -
  NMH04_RS10755 (NMH04_10700) - 2107187..2107693 (-) 507 WP_173408088.1 PTS glucose transporter subunit IIA -
  NMH04_RS10760 (NMH04_10705) - 2107862..2108281 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  NMH04_RS10765 (NMH04_10710) - 2108303..2108755 (-) 453 WP_173408089.1 YppG family protein -
  NMH04_RS10770 (NMH04_10715) - 2108864..2109235 (-) 372 WP_017359730.1 YppE family protein -
  NMH04_RS10775 (NMH04_10720) - 2109294..2109530 (-) 237 WP_173408090.1 DUF5446 family protein -
  NMH04_RS10780 (NMH04_10725) sspM 2109724..2109828 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  NMH04_RS10785 (NMH04_10730) - 2109851..2110807 (-) 957 WP_024718529.1 DUF2515 domain-containing protein -
  NMH04_RS10790 (NMH04_10735) recU 2110854..2111489 (+) 636 WP_050827323.1 Holliday junction resolvase RecU Machinery gene
  NMH04_RS10795 (NMH04_10740) - 2111509..2114196 (+) 2688 WP_057079359.1 PBP1A family penicillin-binding protein -
  NMH04_RS10800 (NMH04_10745) - 2114232..2114741 (-) 510 WP_035702942.1 YpoC family protein -
  NMH04_RS10805 (NMH04_10750) nth 2114738..2115400 (-) 663 WP_008344602.1 endonuclease III -
  NMH04_RS10810 (NMH04_10755) - 2115418..2116122 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24337.64 Da        Isoelectric Point: 9.6582

>NTDB_id=710793 NMH04_RS10790 WP_050827323.1 2110854..2111489(+) (recU) [Bacillus altitudinis strain 47]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=710793 NMH04_RS10790 WP_050827323.1 2110854..2111489(+) (recU) [Bacillus altitudinis strain 47]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGAATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAC
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATATAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697