Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   G6M15_RS09210 Genome accession   NZ_CP116692
Coordinates   1821847..1823520 (-) Length   557 a.a.
NCBI ID   WP_174008868.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain A74a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1816847..1828520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M15_RS09190 (G6M15_09190) - 1816937..1817866 (+) 930 WP_174008864.1 DMT family transporter -
  G6M15_RS09195 (G6M15_09195) - 1818051..1818584 (+) 534 WP_174008865.1 GNAT family N-acetyltransferase -
  G6M15_RS09200 (G6M15_09200) - 1818589..1819482 (-) 894 WP_174008866.1 aminoglycoside phosphotransferase family protein -
  G6M15_RS09205 (G6M15_09205) ligA 1819547..1821721 (-) 2175 WP_174008867.1 NAD-dependent DNA ligase LigA -
  G6M15_RS09210 (G6M15_09210) recN 1821847..1823520 (-) 1674 WP_174008868.1 DNA repair protein RecN Machinery gene
  G6M15_RS09215 (G6M15_09215) - 1823536..1824402 (-) 867 WP_010972044.1 outer membrane protein assembly factor BamD -
  G6M15_RS09220 (G6M15_09220) lpxC 1824637..1825593 (-) 957 WP_121651016.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  G6M15_RS09225 (G6M15_09225) ftsZ 1825864..1827615 (-) 1752 WP_174008869.1 cell division protein FtsZ -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 60151.90 Da        Isoelectric Point: 4.8377

>NTDB_id=710787 G6M15_RS09210 WP_174008868.1 1821847..1823520(-) (recN) [Agrobacterium tumefaciens strain A74a]
MLVQLSIRDIVLIERLDLSFEAGLSVLTGETGAGKSILLDSLSLALGGRGDGGLVRHGEDKGQVTAAFEVPNDHPTRLLL
RENGLDDDGDLIFRRVQSADGRTKAYVNDQAVSVQMMRQLGQMLVEIHGQHDDRALVDTDAHRTLLDAFAGLSDEARTVQ
GLYRTWKDADRALKTHRAKVEAAAREADYLRSSVEELETLSPRDGEEEELAERRAVMQKSERIAGDIAEASEFLNGNASP
VPVIASMMRRLERKSHEAPGLLEDTVQLLDAALDSLSNAQMEVEAALRRTEFDPRELERVEERLFALRAAGRKYNVAVPD
LPALAEKMVTDLADLDAGEEKLGELEANLGVVKADFDRAAQSLSEKRRNAAEALSGAVMAELPALKLERARFTVEVTSDP
EQATADGIDTVEFHVQTNPGTRPGPIMKVASGGELSRFLLALKVALADRGSAPTLVFDEIDTGVGGAVADAIGQRLRRLS
KTVQVLSVTHAPQVAARAATHLLISKGPSGDGSERIATRVATMEPKHRTEEIARMLAGASVTDEARAAAARLLAAKD

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=710787 G6M15_RS09210 WP_174008868.1 1821847..1823520(-) (recN) [Agrobacterium tumefaciens strain A74a]
ATGCTGGTCCAGCTCTCCATACGCGACATCGTTCTGATTGAAAGGCTCGACCTCAGTTTTGAGGCGGGCCTTTCCGTGTT
GACGGGCGAGACGGGTGCCGGCAAATCCATCCTGCTTGACAGTCTTTCGCTTGCGCTTGGCGGTCGTGGTGATGGCGGCC
TTGTGCGCCACGGCGAAGACAAGGGGCAGGTAACCGCCGCTTTCGAAGTCCCGAACGATCATCCCACCCGGCTTCTCCTG
CGCGAAAACGGCCTTGATGACGATGGCGACCTTATTTTCCGGCGCGTGCAATCTGCCGACGGGCGCACCAAGGCCTATGT
CAACGATCAGGCCGTGAGCGTGCAGATGATGCGCCAGCTTGGGCAGATGCTGGTCGAAATTCATGGCCAGCATGACGACC
GCGCCCTTGTCGATACCGACGCCCATCGCACGCTGCTCGATGCCTTTGCCGGGCTGAGCGACGAGGCGCGCACCGTGCAA
GGCCTCTACCGTACCTGGAAGGATGCCGACCGTGCCCTGAAGACCCACCGAGCCAAGGTGGAGGCGGCGGCGCGCGAGGC
GGATTATCTGCGGTCTTCCGTCGAGGAATTGGAAACACTTTCACCGCGCGACGGCGAAGAGGAAGAACTGGCCGAGCGCC
GGGCGGTGATGCAGAAATCCGAACGCATTGCCGGCGATATCGCCGAAGCCAGCGAATTCCTGAACGGTAATGCTTCGCCT
GTGCCTGTCATCGCCTCGATGATGCGCCGGCTGGAGCGCAAGAGCCACGAAGCGCCCGGCCTGCTGGAAGATACCGTACA
GTTGCTGGATGCTGCGCTGGACAGTCTTTCCAATGCGCAGATGGAAGTGGAGGCGGCGCTGCGCCGCACCGAATTCGATC
CGCGTGAGCTGGAGCGGGTGGAGGAACGATTGTTCGCCCTGCGCGCTGCCGGCCGCAAATATAATGTTGCCGTGCCTGAC
CTGCCGGCGCTTGCCGAAAAAATGGTGACGGATCTCGCCGATCTCGATGCCGGCGAAGAAAAGCTCGGCGAGCTCGAGGC
CAATCTCGGCGTCGTGAAGGCTGATTTCGACCGCGCCGCCCAGTCGCTTTCCGAAAAGCGCCGCAATGCGGCGGAGGCGC
TATCGGGGGCTGTCATGGCCGAACTTCCGGCGCTGAAGCTGGAGCGGGCGCGGTTTACCGTCGAGGTAACATCCGATCCC
GAGCAGGCGACGGCCGACGGCATCGATACGGTGGAATTCCACGTTCAGACCAATCCGGGCACACGGCCGGGGCCGATCAT
GAAAGTGGCATCGGGCGGCGAATTGTCCCGCTTCCTGCTGGCCCTTAAAGTGGCGCTGGCGGATCGCGGTTCGGCACCGA
CCCTGGTGTTCGATGAAATCGATACCGGCGTCGGCGGTGCGGTGGCGGATGCCATCGGCCAACGGCTGCGCCGCCTGTCG
AAAACCGTGCAAGTCCTGTCCGTCACCCATGCGCCCCAGGTGGCGGCACGGGCGGCGACTCATCTTCTGATTTCCAAAGG
CCCATCCGGCGATGGCAGCGAGCGCATCGCCACGCGCGTCGCGACCATGGAGCCGAAGCACCGTACCGAAGAGATCGCTC
GCATGCTTGCCGGCGCGTCGGTGACCGACGAGGCGAGGGCTGCGGCTGCGCGCCTGCTCGCGGCAAAGGACTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(14-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

36.412

100

0.368
  recN Bacillus subtilis subsp. subtilis str. 168

34.94

100

0.364